Bioinformatical (62 lineages/sub lineages prototype patterns) and statistical (50 most frequent) classification analysis of SpolDB4. First column ST n°: Shared-type (ST) number of prototype pattern for the linage/sub lineage. Second column: lineage/sub lineage name. Third column: Binary spoligo display with black-white squares for respectively hybridizing-non-hybridizing spacers. Fourth column: Octal code (in red: defining octal rule). Fifth column: total absolute number of isolates of the subclass when variant ST spoligos are included (using SpolNet). Sixth column: same but expressed as percentage of total clustered isolates. * Total number and Frequency for these types are already included in their mother clade if known. Undesignated types are counted within the T1-ill-defined lineage. ** in red: octal rule defining the genotype.
Brudey et al. BMC Microbiology 2006 6:23 doi:10.1186/1471-2180-6-23