Table 3

O157-proteome expressed under anaerobic conditions in dRF and fRF in Experiment I
Protein/Function/Pathway; Name Accession Number Molecular Weight (kDa)1 Number of Peptides (Relative Abundance)2
dRF fRF
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; GpmA gi|157155502 29 kDa 1 (6) 1 (4)
3-isopropylmalate dehydrogenase/Amino acid Biosynthesis; TtC3 gi|170684236 40 kDa 1 (6) 1 (4)
Alkyl hydroperoxide reductase protein C/Energy; AhpC gi|15800320 21 kDa 0 1 (4)
Anaerobic dimethyl sulfoxide reductase/Anaerobic growth/Oxidative Stress; DmsB gi|145756 23 kDa 1 (6) 1 (4)
Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter/Transport; Fadl gi|203282230 47 kDa 1 (6) 1 (4)
Chain A, Crystal Structure Of Ggbp. Glucose-galactose binding protein/Chemotaxis, Transport; Ggbp3 gi|126030485 33 kDa 0 1 (4)
Chain A, Structure Of Ivy/ Lysozyme inhibitor; Ivy gi|29726212 15 kDa 1 (6) 1 (4)
Chaperone protein, stabilizes proteins under heat stress/Heat Stress Related; HchA gi|15802400 31 kDa 0 1 (4)
Chaperonin, type 1 protein/Protein folding/Transport; GroEL3 gi|15834378 57 kDa 3 (18) 3 (11)
Cysteine synthase/Amino acid transport and Metabolism; CysK gi|145686 35 kDa 1 (6) 1 (4)
Cytochrome d ubiquinol oxidase subunit III/Oxidative phosphorylation/Energy; YhCB3 gi|157148804 15 kDa 0 1 (4)
D-ribose transporter subunit B/Transport; RbsB gi|110644091 31 kDa 1 (6) 0
DNA-binding transcriptional activator/Osmotically-inducible lipoprotein E; OsmE gi|15802150 12 kDa 2 (18) 2 (7)
DNA-directed RNA polymerase subunit alpha/Transcription; RpoA gi|123444073 37 kDa 0 1 (4)
Flagellin/Flagellar assembly/Motility; FliC gi|15802358 60 kDa 3 (24) 4 (19)
Formate dehydrogenase-O, iron-sulfur subunit, energy metabolism/Anaerobic Respiration, Glyoxylate & Dicarboxylate Metabolism; FdoH gi|15804482 33 kDa 0 1 (4)
Fructose-bisphosphate aldolase/Glycolysis, Gluconeogenesis, Amino acid Biosynthesis; AldoC gi|161984958 38 kDa 3 (24) 4 (19)
Glucose-specific PTS system component, phosphorylation/Transport; Crr gi|15802950 18 kDa 0 1 (4)
Glyceraldehyde 3-Phosphate Dehydrogenase; GadpH3 gi|1421424 35 kDa 2 (12) 1 (4)
Hypothetical protein CKO_00658/ Uncharacterized; DedA3 gi|157144929 21 kDa 0 1 (4)
Hypothetical protein EcE24377A_0553/Glyoxylate Utilization; GlxB gi|157157046 29 kDa 1 (6) 0
Hypothetical protein ECP_2911/Oxidative Stress; YggE gi|110643066 25 kDa 0 2 (7)
L-asparaginase II, induced by anaerobiosis/Nitrogen and Amino acid Metabolism; AnsB gi|157157301 37 kDa 0 4 (15)
Maltoporin/Receptor for lambda phage/Transport; LamB3 gi|110644375 50 kDa 1 (6) 1 (4)
Molecular chaperone/Protein folding/Transport; DnaK gi|157159481 69 kDa 7 (42) 4 (15)
Molybdopterin biosynthesis protein B/Cofactor Biosynthesis/ Oxidative Stress; MoaB gi|15800533 19 kDa 0 1 (4)
Outer membrane channel protein, efflux of hydrophobic molecules/Transport; TolC gi|110643281 54 kDa 0 2 (7)
Outer membrane porin protein C/Tranport of small molecules/Osmotic; OmpC3 gi|15802768 41 kDa 1 (6) 5 (22)
Outer membrane protein II, porin, receptor, integrity/Membrane Stability; OmpA gi|146983 26 kDa 2 (12) 3 (11)
Outer membrane protein induced after carbon starvation, stationary phase, environmental stress/ Membrane stability; Slp gi|110807343 27 kDa 0 1 (4)
Phosphopyruvate hydratase: enolase/Glycolysis, Gluconeogenesis; Eno3 gi|15832893 46 kDa 0 1 (4)
PTS system, mannose-specific IIAB component/phosphotransferase/Transport; ManX gi|110641934 35 kDa 0 1 (4)
Putative sulfatase/Inorganic ion transport and metabolism/Transport; YdeN3 gi|110641672 63 kDa 0 1 (4)
Pyruvate kinase/Glycolysis, Gluconeogenesis, Amino acid Biosynthesis; PykF gi|110805653 59 kDa 0 1 (4)
Tellurium resistance protein/Stress related; TerD gi|135596 20 kDa 0 1 (4)

1KDa, Kilodalton.

2Relative abundance based on normalized total spectral counts.

3Proteins not identified in Experiment II (see Table 4).

Kudva et al.

Kudva et al. BMC Microbiology 2014 14:48   doi:10.1186/1471-2180-14-48

Open Data