Figure 2.

TFs/sRNA to module assignments by LeMoNe and CLR. Panel A: Assignments for TFs (according to the results in Additional file 1: Table S1). a1: relation between TF assignments and modules. Pink: TFs. Purple: modules, with a higher degree of shading corresponding to a smaller sized module. Red square: enrichment in targets of the assigned TF. Blue lines: assignments uniquely made by CLR. Gray lines: assignments uniquely made by LeMoNe. Orange lines: assignments made by both methods. Bold face lines: assignment confirmed by target enrichment analysis. a2: complementarity in the assignments made by CLR and LeMoNe from the assignment point of view. Gray: assignments uniquely made by LeMoNe. Blue: assignments uniquely made by CLR. Orange: assignments made by both methods. a3: complementarity in the assignments made by CLR and LeMoNe from the TF point of view. Gray: number of TFs uniquely assigned by LeMoNe. Blue: number of TFs uniquely assigned by CLR. Orange: number of TFs assigned by both methods. Panel B: Assignments for sRNAs (according to the results in Additional file 1: Table S1). b1: relation between sRNA assignments and modules. Legend as in Panel A a1 except for Green: sRNAs. Bold face line: the module to which the sRNA was assigned also contains a predicted or an experimentally verified target of the assigned sRNA. b2: complementarity in the assignments made by CLR and LeMoNe from the assignment point of view. Legend as in Panel A a2. b3: complementarity in the assignments made by CLR and LeMoNe from the sRNA point of view. Legend as in Panel A a3.

Ishchukov et al. BMC Microbiology 2014 14:14   doi:10.1186/1471-2180-14-14
Download authors' original image