Scheme of the long-term experiment and of the relative sampling points for the different analyses. The experiment consisted of a 2-week startup period, 1-week control and 1-week treatment. The HMI modules were connected to the ascending colon compartment of a SHIME system during the last 3 days of the control and treatment periods. Samples from the lumen of the SHIME were collected for SCFA and DNA analyses. Samples from the surface of the double functional layer of the HMI modules were collected for DNA analyses. Samples from the lower compartment of the HMI module were collected for IL-8 measurements. DNA = qPCR and DGGE. DNA* = qPCR, DGGE and FISH (the latter only at 48 h).
Marzorati et al. BMC Microbiology 2014 14:133 doi:10.1186/1471-2180-14-133