Table 1

Homology of SfI to S. flexneri phage SfV and E. coli prophage e14 and lambda
Phage or prophage Nucleotide position Homologous nucleotide position in SfI (total length [bp]) % identity at nucleotide level SfI ORFsa % of SfI genome
SfV 9 – 2,211 2 – 2,194 (2,193) 98 orf1, (orf2) 45.6
5,793 – 17,782 6,053 – 18,042 (11,990) 97 orf9 - orf24
19,146 – 22,042 19,787 – 22,681 (2,895) 98 (orf26), orf2 - orf29, attP
36,666 – 37,074 37,964 – 38,372 (409) 89 (orf66)
Lambda 30,418 – 30,910 23,002 – 23,493 (491) 95 (orf31), orf32, (orf33) 28.4
31,206 – 34,381 24,281 – 27,456 (3,176) 98 (orf35), orf36 - orf43
35,104 – 35,386 27,708 – 27,990 (283) 98 (orf45)
35,496 – 41,084 28,052 – 33,640 (5,590) 98 orf46 - orf55
42,097 – 43,068 2 - 2,194 (2,193) 97 orf57 - orf59, (orf60)
45,966 – 46,361 6,053 -18,042 (11,990) 80 (orf64)
e14 2,840,259 - 2,859,298b 1 - 17,234, 36,721 - 38,389 (17,660) 97 orf1 - orf22, (orf66) 46%

a Parentheses indicate that the region of homology starts or ends within an ORF.

bE. coli S88 strain genome (accession no. CU928161).

Sun et al.

Sun et al. BMC Microbiology 2013 13:39   doi:10.1186/1471-2180-13-39

Open Data