Table 2

Spacers allelic polymorphism and MST a genotypes of M. abscessus, “M. bolletii” and “M. massiliense” isolates
Isolates Spacer1 Spacer2 Spacer3 Spacer4 Spacer5 Spacer6 Spacer7 Spacer8 Genotype
M.abscessus_ATCC19977_CIP104536T 1 1 1 1 1 1 1 1 1
M.abscessus_DSMZ44567 2 1 2 2 2 1 2 1 2
P1 2 1 2 2 2 1 2 1 2
P2.1 1 2 1 3 1 1 2 2 3
P2.2 1 2 1 3 1 1 2 2 3
P2.3 1 1 1 1 1 1 1 1 1
P2.4 1 1 1 1 1 1 1 1 1
P2.5 1 1 1 1 1 1 1 1 1
P2.6 1 1 1 1 1 1 1 1 1
P3.1 3 1 2 1 1 1 2 1 4
P3.2 3 1 2 1 1 1 2 1 4
P4 1 1 1 1 1 1 1 2 5
P5 1 1 1 1 3 1 2 1 6
P6 1 1 1 1 1 1 1 1 1
P7 4 1 2 4 4 1 2 1 7
P8 4 1 2 4 4 1 3 1 8
M.abscessus_3A-0930-R_3A_0930_R 1 1 1 1 1 1 1 1 1
M.abscessus_3A-0930-S_3A_0930_S 1 1 1 1 1 1 1 1 1
M.abscessus_3A-0122-S_3A_0122_S 1 1 1 1 1 1 1 1 1
M.abscessus_3A-0731_3A_0731 1 1 1 1 1 1 1 1 1
M.abscessus_3A-0122-R_3A_0122_R 1 1 1 1 1 1 1 1 1
M.abscessus_3A-0119-R_3A_0119_R 1 1 1 1 1 1 1 1 1
M.abscessus_6G-0728-R_M6G_0728_R 1 1 1 1 1 1 1 1 1
M.abscessus_6G-0212_M6G_0212 1 1 1 1 1 1 1 1 1
M.abscessus _6G-1108_6G_1108 1 1 1 1 1 1 1 1 1
M.abscessus _6G-0728-S_6G_0728_S 1 1 1 1 1 1 1 1 1
M.abscessus_6G-0125-R_6G_0125_R 1 1 1 1 1 1 1 1 1
M.abscessus _6G-0125-S_6G_0125_S 1 1 1 1 1 1 1 1 1
M.abscessus_4S-0116-S_4S_0116_S 5 1 2 5 5 2 2 2 9
M.abscessus_4S-0116-R_4S_0116_R 5 1 2 5 5 2 2 2 9
M.abscessus_4S-0206_M4S_0206 5 1 2 5 5 2 2 2 9
M.abscessus_4S-0726-RB_4S_0726_RB 5 1 2 5 5 2 2 2 9
M.abscessus_4S-0303_4S_0303 5 1 2 5 5 2 2 2 9
M.abscessus_4S-0726-RA_4S_0726_RA 5 1 2 5 5 2 2 2 9
M.abscessus_M93 3 1 2 6 6 1 2 3 10
M.abscessus_M94 2 1 2 2 7 1 4 2 11
M.abscessus_M152 2 1 2 7 7 1 2 3 12
M.bolletti_CIP108541T 6 3 3 3 8 1 5 2 13
P9 6 3 3 3 8 1 5 2 13
P10 7 4 1 3 8 1 2 2 14
M.abscessus_M24 8 3 4 8 8 1 2 2 15
M.massilliense_CIP108297T 5 5 5 9 9 1 6 3 16
P11 5 5 5 9 9 1 6 3 16
M.massiliense _2B-0912-S_2B_0912_S 9 5 6 10 10 2 7 3 17
M.massiliense_2B-030_ M2B_0307 9 5 6 10 10 2 7 3 17
M.massiliense_2B-0912-R_2B_0912_R 9 5 6 10 10 2 7 3 17
M.massiliense_2B-0626_M2B_0626 9 5 6 10 10 2 7 3 17
M.massiliense_2B-1231_M2B_1231 9 5 6 10 10 2 7 3 17
M.massiliense_2B-0107_M2B_0107 9 5 6 10 10 2 7 3 17
M.massiliense _1S-154-0310_M1S_154_0310 9 5 6 10 10 2 7 3 17
M.massiliense_1S-152-0914_M1S_152_0914 9 5 6 10 10 2 7 3 17
M.massiliense_1S-153-0915_M1S_153_0915 9 5 6 10 10 2 7 3 17
M.massiliense_1S-151-0930_M1S_151_0930 9 5 6 10 10 2 7 3 17
M.massiliense _M18 9 5 6 10 10 2 7 3 17
M.abscessus_M159 9 6 6 9 10 3 7 4 18
M.abscessus_47J26 9 5 6 6 11 4 7 3 19
M.abscessus_M172 10 7 2 9 12 3 8 5 20
M.abscessus_M154 10 7 2 9 12 3 8 5 20
M.abscessus_5S-1215_5S_1215 11 5 2 6 13 2 6 2 21
M.abscessus_5S-1212_5S_1212 11 5 2 6 13 2 6 2 21
M.abscessus_5S-0817_5S_0817 11 5 2 6 13 2 6 2 21
M.abscessus_5S-0708_5S_0708 11 5 2 6 13 2 6 2 21
M.abscessus_5S-0422_5S_0422 11 5 2 6 13 2 6 2 21
M.abscessus_5S-0304_5S_0304 11 5 2 6 13 2 6 2 21
M.abscessus_5S-0421_5S_0421 11 5 2 6 13 2 6 2 21
M.abscessus_M156 10 7 2 11 12 3 9 5 22
M.abscessus_M148 10 7 2 11 12 3 9 5 23
M.abscessus_M139 10 5 2 11 14 3 10 3 24
DI 0.8295 0.6228 0.6969 0.8001 0.8371 0.6038 0.8084 0.7158 0.912

aMST = Multispacer Sequence Typing. b isolates were listed with reference to their corresponding patient, for example P1 = isolate 1 from patient 1, P2.1 = isolate 1 from patient 2, etc. cDI = Discrimination index.

Sassi et al.

Sassi et al. BMC Microbiology 2013 13:3   doi:10.1186/1471-2180-13-3

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