Table 1

Similarity (%) of the most conserved mycobacterial proteins in Mycobacterium spp., Corynebacterium spp., Nocardia spp. and Rhodococcus spp. genomes, in comparison with M. tuberculosis H37Rv genome
Protein locus (H37Rv genome) Rv1305 Rv0236A Rv0197 Rv2172c Rv0287 Rv0288 Rv3019c Rv0285 Rv3022c Rv1304 Rv3392c
protein length (aa) 81 57 762 301 97 96 96 102 81 250 287
gene name atpE - - lppM esxG esxH esxR PE5 PPE48 atpB cmaA1
M. tuberculosis H37Ra 100 100 99 100 100 100 100 100 100 100 100
M. tuberculosis CDC1551 100 100 99 100 100 100 100 100 100 100 99
M. tuberculosis KZN 1435 100 100 99 100 100 100 100 100 100 100 100
M. bovis AF2122/97 100 100 99 100 100 100 100 100 98 100 100
M. ulcerans Agy99 100 96 86 90 96 92 93 93 83 96 87
M. marinum M 100 98 90 91 96 89 94 93 82 97 88
M. avium104 96 96 91 91 91 89 91 92 83 93 82
M. paratuberculosis K10 96 96 91 91 91 89 91 92 85 92 82
M. smegmatis MC2 155 93 91 85 83 87 85 85 87 82 84 86
M. abscessus ATCC 19977 98 85 85 82 81 81 80 82 81 85 82
M. gilvum PYR-GCK 100 91 85 86 88 88 85 85 80 83 81
M. vanbaalenii PYR-1 93 91 85 87 89 85 83 82 83 84 81
Mycobacterium sp. JLS 100 91 85 86 87 86 86 82 82 89 92
Mycobacterium sp. KMS 100 91 86 86 88 86 86 82 82 89 91
Mycobacterium sp. MCS 100 91 86 86 88 86 86 82 82 89 91
C. aurimucosum ATCC 700975 0 0 0 0 0 0 0 0 0 0 46
C. diphteriae NCTC 13129 0 0 0 0 0 0 0 0 0 43 0
C. efficiens YS-314 0 0 42 0 0 0 0 0 0 0 0
C. glutamicum ATCC 13032 0 0 42 0 0 0 0 0 0 0 47
C. jeikeium K411 0 0 0 0 0 0 0 0 0 45 0
C. kroppenstedtii DSM 44385 0 0 0 0 0 0 0 0 0 41 47
C. urealyticum DSM 7109 0 0 38 0 0 0 0 0 0 44 41
Nocardioides sp. JS614 0 0 40 0 0 0 0 0 0 46 46
N. farcinica IFM 10152 0 0 42 0 0 0 0 0 0 0 44
R. erythropolis PR4 0 0 42 0 0 0 0 0 0 42 48
R. jostii RHA1 0 0 44 0 0 0 0 0 0 41 49
R. opacus B4 0 0 44 0 0 0 0 0 0 41 50

Protein similarities were sorted (Figure 2) according to the strategy of genome comparison (Figure 1). Only proteins presenting more than 80% of similarity with Mycobacterium spp. genomes, and less than 50% of similarity with non-mycobacterial genomes, are shown.

Radomski et al.

Radomski et al. BMC Microbiology 2013 13:277   doi:10.1186/1471-2180-13-277

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