Table 1

Virome sequence volume, alignments and richness
Alignments to other viromes (%) Richness by CatchAll
Sample Data trimmedT (Read pairs) Cow 6993 [8] Cow 7664 [8] Cow 7887 [8] Swine faeces [18]+ Human saliva [19]+ Pond [20]+ Best modelB Estimated total species ± S.E. Best discounted modelD Estimated total species ± S.E.
Cow 2202C 52,239,452 3.22 3.25 1.86 0.07 <0.01 <0.01 2MixedExp 5550786 ± 465864.1 SingleExp 18412.6 ± 1544.2
Cow 657 2,116,650 4.86 4.91 3.12 0.05 <0.01 <0.01 3MixedExp 4679342 ± 676180.6 2MixedExp 26795.8 ± 3871.9
Cow 1995 3,410,438 3.88 4.69 2.69 0.04 <0.01 <0.01 2MixedExp 5952188.7 ± 295239.5 SingleExp 5313.4 ± 263.5
Cow 2028 6,956,332 3.57 4.24 2.30 0.04 <0.01 <0.01 3MixedExp 6515260.9 ± 338382 2MixedExp 3369.8 ± 175
Cow 2042 4,048,214 3.19 3.71 2.22 0.03 <0.01 <0.01 2MixedExp 7904757.2 ± 622624.3 SingleExp 9023.1 ± 707.6
Cow 2165 4,362,890 4.57 5.14 3.20 0.04 <0.01 <0.01 4MixedExp 10353681.8 ± 119769.7 3MixedExp 1376492.9 ± 15923
Cow 3060 3,899,392 4.53 5.01 3.35 0.05 <0.01 <0.01 2MixedExp 5805999.9 ± 388938 SingleExp 11428.7 ± 765.5
Cow 4570 4,365,420 3.41 4.05 2.53 0.04 <0.01 <0.01 4MixedExp 22410379.6 ± 511083.2 3MixedExp 4126756.3 ± 94113.3
Cow 5679 3,681,922 3.70 4.84 2.67 0.04 <0.01 <0.01 3MixedExp 6098575.2 ± 404293.2 2MixedExp 6772.1 ± 448.5
Cow 6833 3,455,882 3.58 4.18 2.55 0.05 <0.01 <0.01 3MixedExp 7427673 ± 2447886.4 2MixedExp 30174.7 ± 9943.8
Cow 6857 8,998,900 4.18 4.71 2.77 0.04 <0.01 <0.01 3MixedExp 7916340 ± 2025360.6 2MixedExp 23466.2 ± 6003
Cow 6870 3,906,564 4.49 5.88 3.60 0.03 <0.01 <0.01 2MixedExp 4794540.3 ± 304303.4 SingleExp 13438.6 ± 852.7
Cow 7939 5,119,322 3.45 5.02 2.84 0.03 <0.01 <0.01 2MixedExp 6757358.4 ± 455261 SingleExp 7504.3 ± 495.6
Average* 8,197,029 3.89 4.59 2.75 0.04 <0.01 <0.01 - 7,858,991 - 435,304

*Average of all samples from this study.

CCannulated animal.

TAmount of sequence remaining after removal of poor quality bases.

+Multiple samples from study combined.

BBest Model as assessed by the CatchALL program.

DBest Model that has been corrected using the assumption of overrepresented singletons.

Ross et al.

Ross et al. BMC Microbiology 2013 13:242   doi:10.1186/1471-2180-13-242

Open Data