Table 3 |
|||||
| Sequences analysis of V3 region of 16S rRNA gene from PCR-DGGE | |||||
| OL group | CS group | ||||
| Band No | Nearest cultured relative (GenBank accession No) | %a | Band No | Nearest cultured relative (GenBank accession No) | %a |
| O-1 | C. populeti (NR026103) | 99 | C-1 | P. ruminicola (NR044632) | 98 |
| O-2 | P. salivae (NR024816) | 93 | C-2 | P. loescheii (NR043216) | 96 |
| O-3 | St. pasteurianus (NR043660) | 100 | C-3 | C. populeti (NR026103) | 98 |
| O-4 | P. dentalis (NR029284) | 94 | C-4 | P. pleuritidis (NR041541) | 94 |
| O-5 | P. salivae (NR024816) | 96 | C-5 | C. populeti (NR026103) | 98 |
| O-6 | P. denticola (NR042842) | 95 | C-6 | P. pleuritidis (NR041541) | 94 |
| O-7 | P. oulorum (NR029147) | 94 | C-7 | P. corporis (NR044627) | 94 |
| O-8 | P. buccalis (NR044630) | 94 | C-8 | P. buccalis (NR044630) | 94 |
| O-9 | E. cellulosolvens (NR026106) | 98 | C-9 | P. dentalis (NR029284) | 95 |
| O-10 | S. dextrinosolvens (NR026476) | 98 | C-10 | S. dextrinosolvens (NR026476) | 98 |
| O-11 | P. salivae (NR024816) | 95 | C-11 | P. dentalis (NR029284) | 93 |
| O-12 | M. indoligenes (NR043775) | 97 | C-12 | P. melaninogenica (NR042843) | 95 |
| O-13 | Ps. ruminis (NR026315) | 99 | C-13 | G. mesophilus (NR041450) | 88 |
| O-14 | P. oulorum (NR029147) | 94 | C-14 | E. cellulosolvens (NR026106) | 98 |
| O-15 | P. dentalis (NR029284) | 94 | C-15 | P. dentalis (NR029284) | 95 |
| O-16 | P. histicola (NR044407) | 95 | C-16 | P. loescheii (NR043216) | 93 |
| O-17 | P. dentalis (NR029284) | 95 | C-17 | P. salivae (NR024816) | 88 |
| O-18 | St. pasteurianus (NR043660) | 100 | C-18 | Cp. utactus (NR044049) | 98 |
| O-19 | P. dentalis (NR029284) | 96 | C-19 | D. acidaminovorans (NR029034) | 92 |
| O-20 | P. dentalis (NR029284) | 96 | C-20 | D. acidaminovorans (NR029034) | 92 |
| C-21 | E. ruminantium (NR024661) | 93 | |||
| C-22 | G. esophilus (NR041450) | 91 | |||
| C-23 | P. copri (NR040877) | 92 | |||
| C-24 | Ca. cynodegmi (NR043063) | 88 | |||
| C-25 | P. copri (NR040877) | 93 | |||
| C-26 | P. dentalis (NR029284) | 94 | |||
| C-27 | B. uniformis (NR040866) | 94 | |||
C Clostridium, E Eubacterium, P Prevotella, S Succinivibrio, St Streptococcus, M Moryella, Ps Pseudobutyrivibrio, Cp Coprococcus, G Galbibacter, Ca Capnocytophaga, B Bacteroides, D Dethiosulfovibrio, a sequence similarity.
Li et al.
Li et al. BMC Microbiology 2013 13:151 doi:10.1186/1471-2180-13-151
