Table 1

List of the alleles and sequence type, origin of the sample, antibiotic pattern and number of patient for each isolate
Isolates Patient Sample origina STs acsA aroE guaA mutL nuoD ppsA trpE Antibiotic patternb
PaC1 1 W ST-1138* 5 3 79 5 1 7 47 XDR
PaC49 1 RS ST-1191* 45 148* 15 35 53 106* 3 MDR
PaC51 1 RS ST-1147* 17 3 5 3 1 6 26 non-MDR
PaC52 1 W ST-1138* 5 3 79 5 1 7 47 XDR
PaC2 2 W ST-175 28 22 5 3 3 14 19 XDR
PaC3 3 R ST-235 38 11 3 13 1 2 4 non-MDR
PaC4 4 R ST-800 17 22 11 3 3 15 3 non-MDR
PaC5 5 W ST-108 39 5 20 5 1 6 31 XDR
PaC7 6 R New-1 28 5 36 - 3 13 7 MDR
PaC16 6 R New-2 28 5 20 - 3 13 7 MDR
PaC9 7 U ST-274 23 5 11 7 1 12 7 XDR
PaC10 8 U ST-1139* 28 22 20 3 3 14 19 XDR
PaC19 8 U ST-175 28 22 5 3 3 14 19 XDR
PaC32 8 RS ST-175 28 22 5 3 3 14 19 XDR
PaC40 8 R ST-175 28 22 5 3 3 14 19 XDR
PaC11 9 U ST-235 38 11 3 13 1 2 4 XDR
PaC24 9 U ST-235 38 11 3 13 1 2 4 XDR
PaC12 10 R ST-1140* 38 11 20 13 1 2 4 XDR
PaC14 11 R ST-1141* 113 4 5 67 1 17 26 non-MDR
PaC15 12 R ST-1142* 35 11 112 16 1 6 42 MDR
PaC17 13 R ST-1186* 39 5 20 59* 1 20 15 non-MDR
PaC18a 14 U ST-1143* 8 5 9 3 1 4 9 non-MDR
PaC18b 14 U ST-1143* 8 5 9 3 1 4 9 non-MDR
PaC20 15 U ST-1144* 39 10 1 3 4 6 7 non-MDR
PaC21 16 R ST-175 28 22 5 3 3 14 19 XDR
PaC23 17 U ST-1187* 35 22 5 3 1 104* 4 non-MDR
PaC25a 18 U ST-207 47 4 5 33 1 6 40 non-MDR
PaC25b 18 U ST-207 47 4 5 33 1 6 40 non-MDR
PaC26 19 R ST-235 38 11 3 13 1 2 4 XDR
PaC27 20 R ST-274 23 5 11 7 1 12 7 non-MDR
PaC28 21 U ST-1188* 69* 147* 5 11 2 15 2 MDR
PaC29 22 R ST-1145* 15 5 1 1 1 12 1 non-MDR
PaC30 23 PS ST-244 17 5 12 3 14 4 7 non-MDR
PaC31 24 U ST-499 11 5 7 27 2 7 33 MDR
PaC33 25 R ST-175 28 22 5 3 3 14 19 XDR
PaC34 26 R ST-179 36 27 28 3 4 13 7 MDR
PaC35 27 U ST-235 38 11 3 13 1 2 4 MDR
PaC36a 28 R ST-175 28 22 5 3 3 14 19 XDR
PaC36b 28 R ST-175 28 22 5 3 3 14 19 MDR
PaC37 29 B ST-175 28 22 5 3 3 14 19 XDR
PaC38 29 B ST-175 28 22 5 3 3 14 19 XDR
PaC39 30 U ST-508 15 5 11 3 2 4 3 non-MDR
PaC41 31 U ST-1189* 72* 5 11 72 3 105* 3 non-MDR
PaC42 32 W ST-253 4 4 16 12 1 6 3 MDR
PaC56 32 B ST-253 4 4 16 12 1 6 3 MDR
PaC43 33 R ST-235 38 11 3 13 1 2 4 XDR
PaC44 34 U ST-316 13 8 9 3 1 6 9 non-MDR
PaC45 35 U ST-175 28 22 5 3 3 14 19 XDR
PaC46 36 R ST-1190* 45 148* 15 35 53 106* 19 MDR
PaC47 37 R ST-175 28 22 5 3 3 14 19 XDR
PaC48 38 R ST-253 4 4 16 12 1 6 3 non-MDR
PaC54 38 R ST-253 4 4 16 12 1 6 3 non-MDR
PaC50 39 US ST-1146* 5 11 57 33 1 6 3 non-MDR
PaC53 40 U ST-1148* 16 5 12 3 2 1 18 non-MDR
PaC55 41 R ST-179 36 27 28 3 4 13 7 non-MDR
PaC57 42 R ST-1149* 18 11 57 5 1 20 26 non-MDR

Asterisk mark (*) indicates the new alleles, new alleles combinations, and new sequence types described in this study. -, gene not amplified/sequenced.

aSample origin: blood (B), wound (W), urine (U), respiratory (R), rectal smear (RS), urethral smear (US), prepuce smear (PS).

bThe isolates were classified according to the resistance pattern, as multidrug-resistant (MDR, non-susceptible to ≥1 agent in ≥3 antibiotic categories), extensively drug-resistant (XDR, non-susceptible to ≥ 1 agent in all but ≤2 antibiotic categories) and non-multidrug resistant (non-MDR).

Gomila et al.

Gomila et al. BMC Microbiology 2013 13:138   doi:10.1186/1471-2180-13-138

Open Data