Table 1

PFAM functional enrichment
PFAM Term # Specified Genes Whole Genome Specified Gene % Whole Genome % P Value Corrected P Value
Day 2 Spherules Upregulated
Thioesterase superfamily (4HBT) 5 6 0.99 0.06 0.0 0.0010
Short chain dehydrogenase 11 57 2.19 0.58 0.0 0.04
Aldol-keto_reductase 6 13 1.19 0.13 0.0 0.0080
Day 8 Spherules Upregulated
MFS_1 14 140 3.85 1.43 0.0 0.131
Aldol-keto_reductase 5 13 1.37 0.13 0.0 0.018
Day 8 vs 2 Spherules Upregulated
C2 6 11 0.96 0.11 0.0 0.0090
PHD 8 16 1.29 0.16 0.0 0.0010
SH3_1 8 24 1.29 0.25 0.0 0.027
Pkinase 21 92 3.38 0.94 0.0 0.0
Day 2 Spherules Downregulated
PH 8 16 0.93 0.16 0.0 0.011
SH3_1 14 24 1.63 0.25 0.0 0.0
SH3_2 11 18 1.28 0.18 0.0 0.0
Pkinase 23 92 2.68 0.94 0.0 0.0010
zf-C2H2 19 53 2.21 0.54 0.0 0.0
Day 8 Spherules Downregulated
Kinesin 6 10 1.14 0.1 0.0 0.0020
Day 8 vs 2 Spherules Downregulated
None

Viriyakosol et al.

Viriyakosol et al. BMC Microbiology 2013 13:121   doi:10.1186/1471-2180-13-121

Open Data