Table 4

Single nucleotide polymorphism (SNP) analysis and dN/dS ratios of categorized and selected coding regions of Pasteurella multocida strains Pm70, P1059, and X73
Location Non-synonymous Synonymous dN/dS
Pm70 vs. P1059 Total 8910 22111 0.4
Cytoplasmic 2431 9933 0.25
Cytoplasmic membrane 1556 5556 0.28
Extracellular 94 103 0.91
Outer membrane 1575 2062 0.76
Periplasmic 93 549 0.17
Pm70 vs. X73 Total 7401 19304 0.38
Cytoplasmic 2384 9162 0.26
Cytoplasmic membrane 1251 4710 0.27
Extracellular 125 134 0.93
Outer membrane 1783 1976 0.9
Periplasmic 98 593 0.17
Function Non-synonymous Synonymous dN/dS
PfhR (pm0040) Putative porin-Fe transport 7 15 0.47
PfhB1 (pm0057) Filamentous hemagglutinin 34 65 0.52
PfhB2 (pm0059) Filamentous hemagglutinin 498 506 0.98
Est (pm0076) Outer membrane esterase 39 59 0.66
PtfA (pm0084) Type IV fimbrial subunit-ptfA 4 0 4
HgbA (pm0300) TonB-dependent hemoglobin receptor 159 152 1.05
Csy1 (pm0305) CRISPR-associated protein 290 130 2.23
OmpW (pm0331) Outer membrane protein 2 4 0.5
pm0336 TonB-dependent receptor 39 57 0.68
HgbB (pm0337) Hemoglobin binding protein 78 90 0.87
OmpH_1 (pm0388) Outer membrane porin 36 66 0.55
OmpH_2 (pm0339) Outer membrane porin 10 16 0.63
TolC1 (pm0527) Outer membrane efflux channel 12 44 0.27
Pcp (pm0554) Peptidoglycan-associated protein 0 3 0
HemR (pm0576) Hemoglobin binding receptor 6 4 1.5
pm0591 Secreted effector protein 75 40 1.88
PhyA (pm0773) Capular polysacharride export protein 2 4 0.5
OmpA (pm0786) Outer membrane protein 61 70 0.87
Pm0803 Outer membrane receptor protein, mostly Fe transport 67 58 1.16
TadF (pm0844) Pilus assembly protein 112 81 1.38
TadE (pm0845) Pilus assembly protein 134 70 1.91
TadD (pm0846) Pilus assembly protein 126 103 1.22
RcpB (pm0851) Pilus assembly protein 144 69 2.08
RcpA (pm0852) Pilus assembly protein 182 222 0.82
RcpC (pm0853) Pilus assembly protein 166 112 1.48
Flp1 (pm0855) Flp pilin component 21 19 1.11
pm0998 Hypothetical protein 6 4 1.5
NanB (pm1000) Outer membrane sialydase 157 161 0.98
TonB (pm1188) TonB energy supply via iron transport 3 4 0.75
GlpQ (pm1444) Glycerophosphodiester 2 3 0.67
PlpE (pm1517) Protective outer membrane lipoprotein 24 39 0.62
PlpP (pm1518) Protective outer membrane lipoprotein 63 55 1.13
TorD (pm1794) Chaperone 4 3 1.33

Johnson et al.

Johnson et al. BMC Microbiology 2013 13:106   doi:10.1186/1471-2180-13-106

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