Table 3

Homology comparison of nucleotide and amino acid sequences of Capsid gene of YN08 isolates Getah virus with other Alphavirus isolatesa
1 2 3 4 5 6 7 8 9 10
1. ALPV_M1 99.66% 99.66% 99.66% 98.97% 97.57% 99.66% 99.31% 99.66% 99.31%
2. GETV_HB0234 98.50% 99.31% 100% 98.62% 97.22% 100% 99.66% 100% 98.97%
3. GETV_LEIV_16275_Mag 98.85% 97.79% 99.31% 98.62% 97.22% 99.31% 98.97% 99.31% 98.97%
4. GETV_LEIV_17741_MPR 99.20% 98.85% 98.27% 98.62% 97.22% 100% 99.66% 100% 98.97%
5. GETV_M1 99.67% 98.15% 98.50% 98.85% 96.51% 98.62% 98.27% 98.62% 98.27%
6. GETV_MM2021 96.25% 95.14% 95.90% 95.64% 95.88% 97.22% 96.87% 97.22% 97.57%
7. GETV_S_Korea 98.62% 99.66% 97.91% 98.97% 98.27% 95.27% 99.66% 100% 98.97%
8. GETV_YN08 98.27% 99.31% 97.56% 98.62% 97.91% 94.89% 99.43% 99.66% 98.62%
9. GETV_YN0540 98.50% 99.32% 97.80% 98.86% 98.15% 95.15% 99.43% 99.08% 98.97%
10.SAGV 98.03% 97.2% 98.04% 97.68% 97.68% 96.50% 97.32% 96.96% 97.44%

Note: a The lower left part represents the homologous rate of nucleotide sequence of viral Capsid gene The upper right part represents the homologous rate of amino acid sequence of viral Capsid gene.

Hu et al.

Hu et al. BMC Microbiology 2012 12:305   doi:10.1186/1471-2180-12-305

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