Table 6

Frequency of carriage of CJIE1 prophage and ORF11 within the predominant flaA SVR types
flaA SVR Total in each type No CJIE1 no Orf 11 (%) With CJIE1 alone (%) With CJIE1 + ORF11 (%)
2 7 7/7 (100) 0 0
5 6 5/6 (83) 0 1/6 (17)
8 13 10/13 (77) 3/13 (23) 0
9 8 7/8 (88) 1/8 (12) 0
11 6 5/6 (83) 1/6 (17) 0
13 12 10/12 (83) 2/12 (17) 0
14 28 26/28 (93) 1/28 (3.5) 1/28 (3.5)
16 23 21/23 (91) 2/23 (9) 0
18 16 14/16 (88) 2/16 (12) 0
21 59 55/59 (93) 2/59 (3.5) 2/59 (3.5)
22 13 12/13 (92) 1/13 (8) 0
34 18 12/18 (67) 4/18 (22) 2/18 (11)
36 24 14/24 (58) 2/24 (8) 8/24 (33)
41 10 9/10 (90) 1/10 (10) 0
42 10 10/10 (100) 0 0
45 5 5/5 (100) 0 0
46 14 10/14 (72) 2/14 (14) 2/14 (14)
49 45 34/45 (76) 5/45 (11) 6/45 (13)
57 8 8/8 (100) 0 0
70 8 6/8 (75) 2/8 (25) 0
122 9 9/9 (100) 0 0
172 12 8/12 (66) 2/12 (17) 2/12 (17)
239 13 10/13 (77) 2/13 (15) 1/13 (8)
245 3 0 3/3 (100) 0
359 27 22/27 (81) 5/27 (19) 0
840 8 8/8 (100) 0 0

Clark et al.

Clark et al. BMC Microbiology 2012 12:269   doi:10.1186/1471-2180-12-269

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