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Open Access Highly Accessed Research article

The effect of training set on the classification of honey bee gut microbiota using the Naïve Bayesian Classifier

Irene LG Newton1* and Guus Roeselers2

Author Affiliations

1 Department of Biology, 1001 E 3rd Street, Bloomington, IN, 47405, USA

2 Microbiology & Systems Biology group, TNO, Utrechtseweg, Zeist, The Netherlands

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BMC Microbiology 2012, 12:221  doi:10.1186/1471-2180-12-221

Published: 26 September 2012

Additional files

Additional file 1:

Table S1. Total number of operational taxonomic units (97% ID) in either genetically uniform or genetically diverse colonies and classified as one of the honey bee specific taxonomic groups.

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Additional file 2:

Table S2. Top scoring blastn hits between full-length, bee specific sequences and the Greengenes training set.

Format: XLSX Size: 46KB Download file

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Additional file 3:

Figure S1. Phylogenetic placement of representative short read classified as Orbus by the RDP + bees training set.

Format: DOCX Size: 271KB Download file

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