Table 2 |
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|
Distribution of the Enterobacteriaceae family. |
||||||
|
pg 2008 |
ps 2008 |
pg 2009 |
ps 2009 |
wg 2009 |
ws 2009 |
|
|
|
||||||
|
Total sequences assigned to anything |
257 |
298 |
10849 |
8567 |
3805 |
4536 |
|
|
||||||
|
Total RDP hits to Enterobacteriaceae |
202 (78.6) |
151 (50.7) |
5716 (52.7) |
2900 (33.9) |
15 (0.39) |
1 (0.02) |
|
|
||||||
|
BLASTN total hit counts |
198 |
147 |
5025 |
2760 |
14 |
1 |
|
|
||||||
|
BLASTN hits to Pantoea species |
172 (86.9) |
91 (61.9) |
1191 (23.7) |
1546 (56.0) |
1 (7.14) |
0 |
|
|
||||||
|
BLASTN hits to Enterobacter species |
2 (1.01) |
35 (23.8) |
1665 (33.13) |
567 (20.5) |
7 (50.0) |
0 |
|
|
||||||
|
BLASTN hits to Citrobacter species |
0 |
0 |
3 (0.06) |
1 (0.04) |
0 |
0 |
|
|
||||||
|
BLASTN hits to Tatumella species |
0 |
0 |
208 (4.14) |
0 |
0 |
0 |
|
|
||||||
|
BLASTN hits to Cronobacter species |
0 |
0 |
49 (0.98) |
25 (0.91) |
0 |
0 |
|
|
||||||
|
BLASTN hits to Erwinia species |
0 |
2 (1.36) |
7 (0.14) |
4 (0.14) |
0 |
0 |
|
|
||||||
|
BLASTN hits to Escherichia species |
2 (1.01) |
5 (3.40) |
52 (1.03) |
3 (0.11) |
0 |
0 |
|
|
||||||
|
BLASTN hits to Klebsiella species |
0 |
2 (1.36) |
8 (0.16) |
3 (0.11) |
0 |
0 |
|
|
||||||
|
BLASTN hits to Trabulsiella odontotermitis |
0 |
0 |
3 (0.06) |
8 (0.29) |
0 |
0 |
|
|
||||||
|
Hits to other Enterobacteriaceae |
22 (11.11) |
12 (8.16) |
1839 (36.6) |
603 (21.9) |
6 (42.9) |
1 (100) |
|
|
||||||
|
Number of RDP hits to Enterobacteriaceae in tomato fruit surfaces and water samples and BLASTN hits to the different genera within the family (percentages are indicated between parentheses). |
||||||
|
Telias et al. BMC Microbiology 2011 11:81 doi:10.1186/1471-2180-11-81 |
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