Table 2

Distribution of the Enterobacteriaceae family.

pg 2008

ps 2008

pg 2009

ps 2009

wg 2009

ws 2009


Total sequences assigned to anything

257

298

10849

8567

3805

4536


Total RDP hits to Enterobacteriaceae

202 (78.6)

151 (50.7)

5716 (52.7)

2900 (33.9)

15 (0.39)

1 (0.02)


BLASTN total hit counts

198

147

5025

2760

14

1


BLASTN hits to Pantoea species

172 (86.9)

91 (61.9)

1191 (23.7)

1546 (56.0)

1 (7.14)

0


BLASTN hits to Enterobacter species

2 (1.01)

35 (23.8)

1665 (33.13)

567 (20.5)

7 (50.0)

0


BLASTN hits to Citrobacter species

0

0

3 (0.06)

1 (0.04)

0

0


BLASTN hits to Tatumella species

0

0

208 (4.14)

0

0

0


BLASTN hits to Cronobacter species

0

0

49 (0.98)

25 (0.91)

0

0


BLASTN hits to Erwinia species

0

2 (1.36)

7 (0.14)

4 (0.14)

0

0


BLASTN hits to Escherichia species

2 (1.01)

5 (3.40)

52 (1.03)

3 (0.11)

0

0


BLASTN hits to Klebsiella species

0

2 (1.36)

8 (0.16)

3 (0.11)

0

0


BLASTN hits to Trabulsiella odontotermitis

0

0

3 (0.06)

8 (0.29)

0

0


Hits to other Enterobacteriaceae

22 (11.11)

12 (8.16)

1839 (36.6)

603 (21.9)

6 (42.9)

1 (100)


Number of RDP hits to Enterobacteriaceae in tomato fruit surfaces and water samples and BLASTN hits to the different genera within the family (percentages are indicated between parentheses).

Telias et al. BMC Microbiology 2011 11:81   doi:10.1186/1471-2180-11-81

Open Data