Table 6

Detected SNPs present in all three samples

Locus tag

Annotation

Position

Reference1

Variants2

Amino Acid Change


Francci3_0398

putative DNA-binding protein

452

G

G/A

Arg -> Gln

Francci3_1612

NLP/P60

356

G

G/A

Arg -> Gln

375

A

A/C

Gln -> His

Francci3_1959

Transposase, IS110

1109

G

G/A

Gly -> Asp

Francci3_2025

Transposase, IS4

81

G

A/G

-

91

C

C/T

Arg -> Cys

119

T

T/C

Val -> Ala

Francci3_2063

hypothetical

310

A

A/C

Met -> Leu

313

C

C/T

Pro -> Ser

333

C

C/T

-

353

A

A/G

Glu -> Gly

Francci3_3047

Radical SAM

93

G

G/C

-

Francci3_3251

putative signal transduction histidine kinase

293

T

C/T

Val -> Ala

Francci3_3418

SsgA

165

C

T/C

-

Francci3_4082

dnaE

3579

T

C/T

-

3601

G

G/A

Glu -> Lys

Francci3_4107

Integrase

135

C

C/T

-

Francci3_4124

Recombinase

162

T

T/A

-

168

C

T/C

-

Francci3_4157

Hypothetical

36

C

C/T

-

49

A

A/G

Ser -> Gly


1 The nucleotide present in the reference genome sequence of Frankia sp. CcI3.

2 The predicted allelic variants for the reference position nucleotide. The most common polymorphic nucleotide is listed first in the proportion.

Bickhart and Benson BMC Microbiology 2011 11:192   doi:10.1186/1471-2180-11-192

Open Data