Table 4

Fold changes of phage related ORFs1

Feature ID

Annotation

5dNH4 vs 3dNH4

3dN2 vs 3dNH4

3dN2 vs 5dNH4


Francci3_0075

phage SPO1 DNA polymerase-related protein

-1.02*

1.19*

1.21*

Francci3_0114

phage integrase

-1.10*

1.54

1.70

Francci3_0407

phage integrase

1.48

1.23

-1.20

Francci3_0878

phage integrase

1.05*

1.55

1.48

Francci3_1095

phage integrase

1.46

1.62

1.11

Francci3_1144

phage integrase

2.72

1.63

-1.67

Francci3_1203

phage integrase

1.39

1.66

1.20

Francci3_1870

phage integrase-like SAM-like

3.05

1.53

-2.00

Francci3_2053

phage integrase-like SAM-like

-1.32

1.83

2.43

Francci3_2147

phage integrase

1.92

1.52

-1.26

Francci3_2228

phage shock protein A, PspA

2.47

1.43

-1.73

Francci3_2304

phage integrase

1.60

-1.24*

-1.99

Francci3_2344

phage integrase

1.59

1.20*

-1.32

Francci3_2443

putative phage-related terminase large subunit

1.34

1.84

1.37

Francci3_2954

bacteriophage (phiC31) resistance gene PglY

1.57

1.38

-1.14*

Francci3_2955

bacteriophage (phiC31) resistance gene PglZ

1.47

1.22*

-1.21*

Francci3_3052

phage integrase

1.07*

1.43

1.34

Francci3_3350

phage integrase

1.42

1.74

1.22

Francci3_3388

phage integrase

1.55

1.84

1.19

Francci3_3390

phage integrase

1.89

-1.09*

1.73

Francci3_3532

phage integrase

2.02

1.48

-1.36

Francci3_3535

phage shock protein A, PspA

-1.98

-1.86

1.06*

Francci3_3583

phage integrase

-1.34

1.39

1.86

Francci3_3734

phage integrase-like SAM-like

1.34

1.62

1.21

Francci3_4274

phage integrase

4.52

1.60

-2.83

Francci3_4338

phage integrase

-1.36

1.69

2.30


1Fold changes calculated as quotients of RPKM values

*Insignificant p value as determined by Kal's ztest.

Negative values indicate a fold reduction of expression in the reference (later) condition.

Bickhart and Benson BMC Microbiology 2011 11:192   doi:10.1186/1471-2180-11-192

Open Data