Table 3

Fold changes of nif cluster ORF expression levels1

Feature ID

Annotation

5dNH4 vs 3dNH4

3dN2 vs 3dNH4

3dN2 vs 5dNH4


Francci3_4473

thiamine pyrophosphate enzyme-like TPP-binding

1.28

1.89

1.48

Francci3_4474

pyruvate flavodoxin/ferredoxin oxidoreductase-like

1.60

1.93

1.20

Francci3_4475

aminotransferase, class V

2.90

1.52

0.90

Francci3_4476

UBA/THIF-type NAD/FAD binding fold

1.20*

2.08

1.73

Francci3_4477

HesB/YadR/YfhF

2.09

2.00

0.04

Francci3_4478

nitrogenase cofactor biosynthesis protein NifB

1.35

2.17

1.61

Francci3_4479

NifZ

0.54

1.45

2.23

Francci3_4480

nitrogen fixation protein NifW

2.49

2.14

0.16*

Francci3_4481

protein of unknown function DUF683

2.81

1.75

0.61

Francci3_4482

protein of unknown function DUF269

0.23*

1.44

1.77

Francci3_4483

Dinitrogenase iron-molybdenum cofactor biosynthesis

1.82

2.03

1.12*

Francci3_4484

nitrogenase molybdenum-iron cofactor biosynthesis protein NifN

2.55

1.78

0.43

Francci3_4485

nitrogenase MoFe cofactor biosynthesis protein NifE

1.47

1.92

1.31

Francci3_4486

nitrogenase molybdenum-iron protein beta chain

1.16*

2.40

2.08

Francci3_4487

nitrogenase molybdenum-iron protein alpha chain

1.62

2.94

1.82

Francci3_4488

nitrogenase iron protein

1.34

3.71

2.77


1Fold changes calculated as quotients of RPKM values

* Insignificant p value as determined by Kal's ztest.

Bickhart and Benson BMC Microbiology 2011 11:192   doi:10.1186/1471-2180-11-192

Open Data