Email updates

Keep up to date with the latest news and content from BMC Microbiology and BioMed Central.

Open Access Highly Accessed Research article

Transcriptomes of Frankia sp. strain CcI3 in growth transitions

Derek M Bickhart12 and David R Benson1*

Author Affiliations

1 Department of Molecular and Cell Biology, U-3125, University of Connecticut, Storrs, CT, USA

2 Bovine Functional Genomics Laboratory, USDA-ARS, Building 200, Room 124B, BARC-East, Beltsville, MD, 20705, USA

For all author emails, please log on.

BMC Microbiology 2011, 11:192  doi:10.1186/1471-2180-11-192

Published: 25 August 2011

Additional files

Additional file 1:

Gene lists for heatmap clusters. List of ORFs segregated as clusters from the heat map figure (Figure 1).

Format: XLS Size: 549KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

3dN2 sample dataset statistics. Tabular output of CLC Genome Workbench software for the 3dN2 sample.

Format: XLS Size: 822KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

3dNH4 sample dataset statistics. Tabular output of CLC Genome Workbench software for the 3dNH4 sample.

Format: XLS Size: 822KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

5dNH4 sample dataset statistics. Tabular output of CLC Genome Workbench software for the 5dNH4 sample.

Format: XLS Size: 822KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Pairwise comparison of three day samples. Comparison of RPKM values from the 3dNH4 and 3dN2 samples for annotated Frankia sp. strain CcI3 ORFs.

Format: XLS Size: 1.9MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 6:

Pairwise comparison of 3dN2 with 5dNH4. Comparison of RPKM values from the 5dNH4 and 3dN2 samples for annotated Frankia sp. strain CcI3 ORFs.

Format: XLS Size: 1.9MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 7:

Pairwise comparison of the two NH4 grown cells. Comparison of RPKM values from the 3dNH4 and 5dNH4 samples for annotated Frankia sp. strain CcI3 ORFs.

Format: XLS Size: 1.9MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 8:

SNP calling and filtering datasets. Excel worksheets containing raw SNP calling data from all three RNA-seq experiments.

Format: XLS Size: 844KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data