Table 6

Annotation of genes in the B. fragilis 638R Bfgi2 insertion.

ORF

Protein

Length

Putative function

% Id/Sima

Organism (Bacteriophage)b

Accession no.c


1

446

Integrase

47/63 (436)

Bacteroides uniformis

AAF74437.1

2

751

Polysialic acid transport protein, KpsD

72/84 (676)

B. fragilis YCH46

BAD48680.1

3

163

Hypothetical protein

37/49 (156)

B. fragilis YCH46

BAD49193.1

4

172

N-acetylmuramyl-L-alanine amidase

60/75 (150)

B. thetaiotaomicron

AA077433.1

5

151

Holin

25/54 (99)

B. subtillus (phi-105)

NP_690778.1

6

1215

Phage related protein, tail component

26/49 (173)

Actinobacillus pleuropneumonia

ZP_00134779.1

7

697

Hypothetical protein

21/40 (300)

Flavobacterium (11b)

YP_112519.1

8

1034

Tail tape measure protein

31/50 (119)

Burkholderia cepacia (BcepNazgul)

NP_918983.1

9

195

Hypothetical protein

32/54 (150)

B. fragilis YCH46

BAD49201.1

10

126

Hypothetical protein

29/52 (86)

B. fragilis YCH46

BAD49202.1

11

425

Phage major capsid

32/50 (252)

Vibrio phage VP882

AAS38503.2

12

204

Prohead protease

42/59 (157)

Lactobacillus casei (A2)

CAD43895.1

13

450

Phage portal protein

34/52 (365)

Pseudomonas (D3)

AAD38955.1

14

543

Terminase (Large subunit)

38/58 (493)

Streptococcus agalactiae (╬╗Sa04)

ABA45667.1

15

145

Terminase (Small subunit)

26/43 (122)

Lactococcus lactis (Bil309)

NP_076733.1

16

139

Hypothetical protein

28/59 (171)

Clostridium difficile 630

CAJ67750.1

17

104

HNH Endonuclease

41/59 (74)

Geobacillus (GBSVI)

ABC61271.1

18

142

Hypothetical protein

98/100 (136)

B. fragilis YCH46

BAD49213.1

19

104

Hypothetical protein

97/100 (93)

B. fragilis YCH46

BAD49214.1

20

320

Hypothetical protein

99/100 (294)

B. fragilis YCH46

BAD49215.1

21

113

Hypothetical protein

99/99 (109)

B. fragilis YCH46

BAD49216.1

22

428

Ctn003

39/53 (420)

B. fragilis YCH46

AAS83476.1

23

175

Ctn002

35/48 (134)

B. fragilis YCH46

AA583475.1

24

25

253

137

Putative DNA Methylase

100/100 (253)

Lactococcus lactis (Tuc2009)

NP_108695.1

26

124

Hypothetical protein

88/88 (116)

B. fragilis YCH46

BAD49220.1

27

150

NinG recombination protein

98/98 (125)

A. actinomycetemcomitans (AaPhi23)

bacteriophage bb bacteriophage

NP_852744.1

28

126

Hypothetical protein

93/94 (116)

B. fragilis YCH46

YP_099756.1

29

149

DNA Topoisomerase I

32/51 (82)

Pediococcus pentosaceus ATCC25745

YP_80446.1

30

106

Excisionase

42/61 (52)

Colwellia psychrerythraea 34H

YP_268668.1

31

198

Hypothetical protein

66/74 (110)

B. fragilis YCH46

BAD49224.1

32

137

Peptidase S24

29/50 (81)

Flavobacterium johnsoniae

EASS8507.1

33

121

Hypothetical protein

35/52 (120)

Pelobacter carbinolicus

YP_358455.1

34

431

C10 protease

28/45 (375)

B. thetaiotaomicron

NP_811364.1


a Percentage identity/similarity, the number in parenthesis is the number of amino acids used in the calculations.

b The organism, with associated bacteriophage in parenthesis where applicable.

cAccession number of the highest scoring BLAST hit with an annotated function.

Thornton et al. BMC Microbiology 2010 10:122   doi:10.1186/1471-2180-10-122

Open Data