Table 4

List of prediction servers of HLA-I binding peptides, their URLs (as of April 2007), and name abbreviations

ID

Servers

Abbreviation

URLs

Prediction algorithm

References

1

BIMAS

BIMAS

[68]

Matrix

[39]

2

HLA Ligand

HLA_LI

[69]

Matrix

[47]

3

IEDB (ANN)

IEDB_ANN

[70]

ANN

[54]

4

IEDB (ARB)

IEDB_ARB

[71]

Matrix

[48]

5

IEDB (SMM)

IEDB_SMM

[72]

Matrix

[49]

6

MAPPP (Bimas)

MAPPP_B

[73]

Matrix

[43]

7

MAPPP (SYFPEITHI)

MAPPP_S

[74]

Matrix

[43]

8

MHC Binder Prediction

MHC_BP

[75]

Matrix

-

9

MHC-BPS

MHC_BPS

[76]

SVM

[55]

10

MHC-I (Multiple matrix)

MHCI_MM

[77]

Structure-based model

[60]

11

MHC-I (Single matrix)

MHCI_SM

[78]

Structure-based model

[60]

12

MHCPred (Interactions)

MHCP_I

[79]

Partial least square

[61]

13

MHCPred (Amino Acids)

MHCP_AA

[80]

Partial least square

[61]

14

MULTIPRED (ANN)

MULTI_ANN

[81]

ANN

[52]

15

MULTIPRED (HMM)

MULTI_HMM

[82]

HMM

[52]

16

MULTIPRED (SVM)

MULTI_SVM

[83]

SVM

[53]

17

NetMHC (ANN)

NETM_ANN

[84]

ANN

[51]

18

NetMHC (Weight Matrix)

NETM_WM

[85]

Matrix

[44]

19

nHLAPred (ANNPred)

NHP_ANN

[86]

ANN

[53]

20

nHLAPred (ComPred)

NHP_CP

[87]

ANN and Matrix

[53]

21

PepDist

PEPDIST

[88]

distance function

[57]

22

PeptideCheck (Matrix)

PEPC_M

[89]

Matrix

[41]

23

Predep

PREDEP

[90]

Structure-based model

[57]

24

ProPred1

PROPRED

[91]

Matrix

[42]

25

Rankpep

RANKPEP

[92]

Matrix

[41]

26

SMM

SMM

[93]

Matrix

[50]

27

SVMHC (MHCPEP)

SVMHC_M

[94]

SVM

[56]

28

SVMHC (SYFPEITHI)

SVMHC_S

[95]

SVM

[56]

29

SVRMHC

SVRMHC

[96]

SVM

[57]

30

SYFPEITHI

SYFPEITHI

[97]

Matrix

[40]

Lin et al. BMC Immunology 2008 9:8   doi:10.1186/1471-2172-9-8