Table 4 |
||||
|
Primer sequences and detailed PCR conditions used to generate standard recombinant DNA. |
||||
|
Gene name |
5'-3' primer sequence |
Positiona (cDNA) |
Annealing temperatureb |
|
|
|
||||
|
IL1a |
FW |
GTGGTGGTGTCAGCAACATCAAAC |
275–862 |
56°C |
|
RW |
GAAATCTATCATGGAGGGCAGTCC |
|||
|
IL1b |
FW |
TGAAAGCTCTCCACCTCAATGGAC |
501–894 |
57°C |
|
RW |
TGCAGCCATCTTTAGGAAGACACG |
|||
|
IL1RA |
FW |
AAGACCTTCTACCTGAGGAACAACC |
139–310 |
55°C |
|
RW |
GCTTGGTGTCATCTCCAGACTTG |
|||
|
IL1R1 |
FW |
TGTCTACTGGAAGTGGAATGGGTC |
1143–1500 |
56°C |
|
RW |
GGGAAGAAAATCAGAGCAGGAGTC |
|||
|
IL1R2 |
FW |
CACCCAGTTCTTGGAGACGATTG |
226–598 |
57°C |
|
RW |
TGGAGGAGAGAGCTGAGATTTGC |
|||
|
IL6 |
FW |
TCTGGAGTTCCGTTTCTACCTGG |
388–682 |
55°C |
|
RW |
CATAGCACACTAGGTTTGCCGAG |
|||
|
IL6R |
FW |
AGCAGGCAATGCTACCATTCAC |
264–873 |
57°C |
|
RW |
GTCGGTATCGAAGCTCGAATTG |
|||
|
TNFa |
FW |
AGCACAGAAAGCATGATCCGAG |
4–499 |
58°C |
|
RW |
CCTGGTATGAAGTGGCAAATCG |
|||
|
TNFR2 |
FW |
TCAGATGTGCTGTGCTAAGTGTCC |
93–512 |
58°C |
|
RW |
GCCAGGATGCTACAAATGCG |
|||
|
SOCS3 |
FW |
ATGGTCACCCACAGCAAGTTTC |
18–679 |
56°C |
|
RW |
TACTGGTCCAGGAACTCCCGAATG |
|||
|
|
||||
|
Abbreviations: see Tables 1, 2. These primer sets allow generating recombinant DNA to ensure the specificity of the PCR amplification or to generate standard curves. a Position of amplification product within cDNA sequence. Genbank accession number are given in Tables 1, 2, b melting temperature of specific PCR product. |
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|
Peinnequin et al. BMC Immunology 2004 5:3 doi:10.1186/1471-2172-5-3 |
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