Table 4

Primer sequences and detailed PCR conditions used to generate standard recombinant DNA.

Gene name

5'-3' primer sequence

Positiona (cDNA)

Annealing temperatureb


IL1a

FW

GTGGTGGTGTCAGCAACATCAAAC

275–862

56°C

RW

GAAATCTATCATGGAGGGCAGTCC

IL1b

FW

TGAAAGCTCTCCACCTCAATGGAC

501–894

57°C

RW

TGCAGCCATCTTTAGGAAGACACG

IL1RA

FW

AAGACCTTCTACCTGAGGAACAACC

139–310

55°C

RW

GCTTGGTGTCATCTCCAGACTTG

IL1R1

FW

TGTCTACTGGAAGTGGAATGGGTC

1143–1500

56°C

RW

GGGAAGAAAATCAGAGCAGGAGTC

IL1R2

FW

CACCCAGTTCTTGGAGACGATTG

226–598

57°C

RW

TGGAGGAGAGAGCTGAGATTTGC

IL6

FW

TCTGGAGTTCCGTTTCTACCTGG

388–682

55°C

RW

CATAGCACACTAGGTTTGCCGAG

IL6R

FW

AGCAGGCAATGCTACCATTCAC

264–873

57°C

RW

GTCGGTATCGAAGCTCGAATTG

TNFa

FW

AGCACAGAAAGCATGATCCGAG

4–499

58°C

RW

CCTGGTATGAAGTGGCAAATCG

TNFR2

FW

TCAGATGTGCTGTGCTAAGTGTCC

93–512

58°C

RW

GCCAGGATGCTACAAATGCG

SOCS3

FW

ATGGTCACCCACAGCAAGTTTC

18–679

56°C

RW

TACTGGTCCAGGAACTCCCGAATG


Abbreviations: see Tables 1, 2. These primer sets allow generating recombinant DNA to ensure the specificity of the PCR amplification or to generate standard curves. a Position of amplification product within cDNA sequence. Genbank accession number are given in Tables 1, 2, b melting temperature of specific PCR product.

Peinnequin et al. BMC Immunology 2004 5:3   doi:10.1186/1471-2172-5-3

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