Table 2

Correspondence of 27 negative TFBS to the TRANSFAC database

ID*

Score

TFBS

# of matches

Name


M00152

13.86

SRF

3(14/18)

Serum response factor

M00255

13.62

GC box

3(13/14)

GC box elements

M00245

13.32

Egr-3

2(12/12)

Early growth response gene 3 product

M00246

12.65

Egr-2

2(12/12)

Egr-2/Krox-20 early growth response gene product

M00982

12.55

KROX

3(12/14)

M00731

12.98

Osf2

3(7/8)

Runt-related transcription factor 2 (Runx2)

M00154

12.15

STRE

2(8/8)

Stress-response element

M00933

12.07

Sp-1

3(8/10)

Stimulating protein 1

M00932

10.55

Sp-1

3(8/13)

Stimulating protein 1

M00931

8.83

Sp-1

2(6/10)

Stimulating protein 1

M00008

8.47

Sp1

2(6/10)

Stimulating protein 1

M00456

11.26

FAC1

3(10/14)

Fetal Alz-50 clone 1

M00360

10.29

Pax-3

3(9/13)

Pax-3 binding sites

M00134

10.19

HNF-4

3(13/19)

Hepatic nuclear factor 4

M00411

9.68

HNF4α1

2(12/15)

Hepatocyte nuclear factor 4

M00316

10.04

Hogness BOX

3(15/30)

Imperfect Hogness/Goldberg Box

M00467

9.83

Roaz

2(8/14)

Rat Olf-1/EBF-associated zinc finger protein

M00977

9.78

EBF

2(7/11)

Early B-cell factor

M00119

9.28

Max

2(12/14)

Max

M00118

9.20

c-Myc:Max

2(12/14)

c-Myc:Max heterodimer

M00953

9.13

AR

3(13/27)

High affinity binding sites for androgen receptor

M00332

8.78

Whn

2(6/11)

Winged-helix factor nude

M00330

8.64

Major T-antigen

2(12/19)

Major T-antigen binding sites

M00763

8.37

PPAR

2(9/13)

Peroxisome proliferator-activated receptor

M00778

8.33

AhR

2(6/11)

Aryl hydrocarbon / dioxin receptor

M00769

8.12

AML

2(7/15)

Leukemia

M00256

8.11

NRSF

2(12/21)

Neuron-restrictive silencer factor


Wang et al. BMC Genomics 2008 9(Suppl 1):S19   doi:10.1186/1471-2164-9-S1-S19

Open Data