Table 1

Representative genes that displayed significant up- or down-expression in the fur mutant

Gene

Annotation

Ratio (p value)


AlcA

siderophore biosynthesis proteinx

13.85 (1.4E-05)

CcmD

heme exporter protein CcmD

5.32 (0.01)

ExbB1

TonB system transport protein ExbB1

15.69 (4.6E-04)

ExbD1

TonB system transport protein ExbD1

12.56 (8.5E-04)

FeoA

ferrous iron transport protein A

5.96 (0.02)

HmuT

hemin ABC transporter, periplasmic hemin-binding protein

4.51 (2.4E-05)

HmuU

hemin ABC transporter, permease protein

5.46 (0.003)

HmuV

hemin ABC transporter, ATP-binding protein

5.46 (0.002)

HugA

heme transport protein

49.79 (4.7E-09)

IrgA

iron-regulated outer membrane virulence protein

8.90 (6.0E-04)

SO1482

TonB-dependent receptor, putative

5.39 (1.1E-06)

SO1580

TonB-dependent heme receptor

3.99 (4.1E-04)

SO3031

siderophore biosynthesis protein, putative

3.60 (1.0E-04)

SO3032

siderophore biosynthesis protein, putative

9.14 (1.4E-04)

SO3033

ferric alcaligin siderophore receptor

10.86 (1.2E-04)

SO3063

sodium: alanine symporter family protein

4.16 (1.6E-05)

SO3914

TonB-dependent receptor, putative

3.63 (0.002)

SO4743

TonB-dependent receptor, putative

3.82 (4.7E-04)

TonB1

TonB1 protein

21.92 (1.7E-05)

ViuA

ferric vibriobactin receptor

5.73 (2.9E-04)

Bfr1

bacterioferritin subunit 1

0.25 (0.04)

InfA

translation initiation factor IF-1

4.32 (0.001)

RplD

ribosomal protein L4

6.32 (4.5E-04)

RplK

ribosomal protein L11

28.83 (0.001)

RpmA

ribosomal protein L27

7.20 (0.005)

RpmF

ribosomal protein L32

3.63 (0.02)

RpmH

ribosomal protein L34

3.55 (0.02)

RpmI

ribosomal protein L35

7.62 (8.3E-04)

SO0401

alcohol dehydrogenase, zinc-containing

6.48 (4.0E-04)

HyaB

quinone-reactive Ni/Fe hydrogenase, large subunit

0.23 (0.04)

NqrD-2

NADH: ubiquinone oxidoreductase, Na translocating

0.27 (0.04)

SO1648

cold shock domain family protein

8.10 (0.02)

SO0130

putative protease

0.18 (0.05)

SO2426

DNA-binding response regulator

9.87 (4.2E-04)

SO0295

transcriptional regulator, LysR family

0.15 (0.03)

SO0577

sensory box histidine kinase/response regulator

0.18 (0.03)

SO2374

transcriptional regulator, LysR family

0.19 (0.03)

SO2498

sensory box protein

0.25 (0.04)

SO3059

formate hydrogenlyase transcriptional activator, putative

0.30 (0.05)

Rsd

regulator of sigma D

0.30 (0.05)


Yang et al. BMC Genomics 2008 9(Suppl 1):S11   doi:10.1186/1471-2164-9-S1-S11

Open Data