Table 5

Potential Pattern Recognition Receptors

Stage

Pfam ID

Accession

e-value

Swissprot (nr) top hit ID*

Accession

e-value


SE

Discoidin

PF00754.14

1.5E-25

CNTP2_PONPY Contactin-associated protein-like 2

73620138

3.0E-11

SE

Thrombospondin type 1

PF00090.8

1.8E-04

ATS18_HUMAN ADAMTS-18 precursor

76800647

2.0E-10

SE

Leucine Rich Repeat

PF00560.20

4.4E-17

LRC57_BRARE Leucine-rich repeat-containing protein

82235961

7.0E-63

SE

Leucine Rich Repeat

PF00560.20

4.8E-16

(PREDICTEDsimilar to scribble)

50769218

3.0E-70

SE

Leucine Rich Repeat

PF00560.20

8.5E-11

(PREDICTEDsimilar to hypothetical PRO1855)

55646569

1.0E-36

SE

Leucine Rich Repeat

PF00560.20

1.7E-11

RTN4R_MACFA Reticulon-4 receptor precursor

25453268

1.0E-14

EP

Scavenger receptor cysteine-rich

PF00530.8

8.5E-24

LOXL3_MOUSE Lysyl oxidase homolog 3

13878586

3.0E-21

EP

Scavenger receptor cysteine-rich

PF00530.8

4.8E-32

(similar to deleted in malignant brain tumors)

73998942

2.0E-30

LPU

Ricin-type beta-trefoil lectin

PF00652.11

1.5E-19

(hemolytic lectin CEL-III)

30060362

4.0E-98

LPU

Thrombospondin type 1

PF00090.8

1.6E-05

(Hypothetical protein F09F9.4)

17551566

8.0E-13

LPU

Scavenger receptor cysteine-rich

PF00530.8

1.2E-07

DMBT1_MOUSE Deleted in malignant brain tumors 1

85687557

8.0E-11

LPU

Chitin binding Peritrophin-A

PF01607.12

2.9E-07

(chitinase2)

46240806

6.0E-06

LPI

Scavenger receptor cysteine-rich

PF00530.8

3.1E-28

(similar to deleted in malignant brain tumors)

72138690

1.0E-24

LPI

Discoidin

PF00754.14

3.5E-30

MFGM_MOUSE Lactadherin precursor

46397820

9.0E-19

LPI

Thrombospondin type 1

PF00090.8

2.6E-07

HMCN1_HUMAN Hemicentin-1 precursor (Fibulin-6)

85542049

4.0E-12

LPI

Fibrinogen

PF00147.7

3.7E-72

FCN1_MOUSE Ficolin-1 precursor

13124179

2.0E-51

LPI

Putative peptidoglycan binding

PF01471.8

9.3E-04

(unnamed protein product)

4722818

3.0E-09

LPU LPI

Thrombospondin type 1

PF00090.8

7.1E-37

HMCN1_HUMAN Hemicentin-1 precursor (Fibulin-6)

85542049

3.0E-40

AC

Discoidin

PF00754.14

1.9E-11

FUCL_ANGAN Fucolectin

82131101

2.0E-17

AC

Thrombospondin type 1

PF00090.8

4.3E-22

SEM5A_MOUSE Semaphorin-5A precursor

8134718

1.0E-25

LPU

Leucine Rich Repeat

PF00560.20

7.5E-15

SHOC2_HUMAN Leucine-rich repeat protein SHOC-2

14423936

3.0E-59

LPI

Galactose binding lectin

PF02140.7

2.0E-06

(similar to latrophilin 2)

68400086

6.0E-08

AC

NA

NA

NA

TAL2_TACTR Tachylectin-2

18202523

1.0E-34


Schwarz et al. BMC Genomics 2008 9:97   doi:10.1186/1471-2164-9-97

Open Data