Table 2 |
|||||
|
Gene Ontology terms which are over- or under-represented among the rapidly or slowly evolving cichlid ORFs. Hypergeometic p-values are reported uncorrected for multiple testing. The number of ORFs of deviating evolutionary rate (#) relative to the number of core set ORFs (total) is given. |
|||||
|
Representation |
GO-ID |
p-value |
# |
total |
Description |
|
|
|||||
|
biological process |
42 with higher p-distance (647 annotated) |
||||
|
over |
none |
||||
|
under |
GO:0050896 |
0.0161 |
1 |
86 |
response to stimulus |
|
GO:0009987 |
0.0439 |
12 |
273 |
cellular process |
|
|
molecular function |
44 with higher p-distance (675 annotated) |
||||
|
none |
|||||
|
Cellular component |
40 with higher p-distance (619 annotated) |
||||
|
over |
GO:0015629 |
0.0327 |
6 |
39 |
actin cytoskeleton |
|
under |
none |
||||
|
biological process |
103 with lower p-distance (647 annotated) |
||||
|
over |
GO:0009987 |
0.0024 |
57 |
273 |
cellular process |
|
over |
GO:0007243 |
0.0052 |
8 |
19 |
protein kinase cascade |
|
over |
GO:0007155 |
0.0205 |
7 |
19 |
cell adhesion |
|
over |
GO:0040007 |
0.0208 |
6 |
15 |
growth |
|
over |
GO:0007154 |
0.0230 |
25 |
109 |
cell communication |
|
over |
GO:0007267 |
0.0071 |
7 |
16 |
cell-cell signaling |
|
over |
GO:0016477 |
0.0290 |
5 |
12 |
cell migration |
|
over |
GO:0040008 |
0.0290 |
5 |
12 |
regulation of growth |
|
over |
GO:0007409 |
0.0308 |
3 |
5 |
axonogenesis |
|
over |
GO:0007610 |
0.0308 |
3 |
5 |
behavior |
|
over |
GO:0015674 |
0.0308 |
3 |
5 |
di-, tri-valent inorganic cation transport |
|
over |
GO:0019752 |
0.0376 |
10 |
35 |
carboxylic acid metabolic process |
|
over |
GO:0007067 |
0.0402 |
4 |
9 |
mitosis |
|
over |
GO:0007417 |
0.0402 |
4 |
9 |
central nervous system development |
|
under |
GO:0008152 |
0.0016 |
63 |
477 |
metabolic process |
|
under |
GO:0046907 |
0.0180 |
2 |
44 |
intracellular transport |
|
under |
GO:0045045 |
0.0295 |
0 |
20 |
secretory pathway |
|
under |
GO:0009117 |
0.0421 |
0 |
18 |
nucleotide metabolic process |
|
molecular function |
110 with lower p-distance (675 annotated) |
||||
|
over |
GO:0004930 |
0.0157 |
4 |
7 |
G-protein |
|
over |
GO:0003774 |
0.0233 |
6 |
15 |
motor activity |
|
over |
GO:0005262 |
0.0264 |
2 |
2 |
calcium channel |
|
over |
GO:0008047 |
0.0324 |
6 |
16 |
enzyme activator activity |
|
over |
GO:0005509 |
0.0333 |
12 |
43 |
calcium ion binding |
|
over |
GO:0019899 |
0.0435 |
4 |
9 |
enzyme binding |
|
under |
GO:0005525 |
0.0116 |
1 |
36 |
GTP binding |
|
under |
GO:0005198 |
0.0407 |
8 |
85 |
structural molecule activity |
|
under |
GO:0051082 |
0.0467 |
0 |
17 |
unfolded protein binding |
|
under |
GO:0003743 |
0.0467 |
0 |
17 |
translation initiation factor activity |
|
under |
GO:0003924 |
0.0481 |
1 |
27 |
GTPase activity |
|
under |
GO:0003676 |
0.0483 |
17 |
147 |
nucleic acid binding |
|
cellular component |
97 with lower p-distance (619 annotated) |
||||
|
over |
GO:0016021 |
0.0096 |
22 |
88 |
integral to membrane |
|
over |
GO:0015630 |
0.0388 |
5 |
13 |
microtubule cytoskeleton |
|
over |
GO:0005625 |
0.0479 |
6 |
18 |
soluble fraction |
|
over |
GO:0005615 |
0.0479 |
6 |
18 |
extracellular space |
|
under |
GO:0032991 |
0.0001 |
19 |
222 |
macromolecular complex |
|
under |
GO:0043234 |
0.0015 |
18 |
195 |
protein complex |
|
under |
GO:0043226 |
0.0089 |
56 |
425 |
organelle |
|
under |
GO:0030529 |
0.0139 |
4 |
65 |
ribonucleoprotein complex |
|
under |
GO:0005829 |
0.0267 |
3 |
51 |
cytosol |
|
under |
GO:0005739 |
0.0311 |
6 |
75 |
mitochondrion |
|
|
|||||
|
Salzburger et al. BMC Genomics 2008 9:96 doi:10.1186/1471-2164-9-96 |
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