Table 3

A detailed manual analysis

missing in RAST

missing in SEED


Genome

RNAs

hypoth.

non-hypo

hypoth.

non-hypo


Alcanivorax borkumensis SK2

51

113

38

49

16

Methanocaldococcus jannaschii DSM 2661

43

105

25

74

19

Wolinella succinogenes DSM 1740

45

40

44

98

22


A detailed manual analysis of the genes called in RAST and in the SEED sheds some light on the differences in the respective predictions. As the matching was performed on protein sequences, RNAs could not be matched. Genes found in the SEED and not predicted in the RAST were split into two categories with and without hypothetical annotations. Additional predictions found in RAST but not in SEED were also included and again split into hypothetical and non-hypothetical.

Aziz et al. BMC Genomics 2008 9:75   doi:10.1186/1471-2164-9-75

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