Table 1

Comparison between the original NCBI descriptions and OxyGene new ontology

NCBI versus OxyGene descriptions

CAT_BFL

CAT_MON

CAT_SRP

CAT_GAT

CAT_MNG


catalase

25

251

26

76 5

27 21

hypothetical protein

6

14

7

bi-functional catalase-peroxidase

3

-

-

-

-

catalase/hydroperoxidase HPI

146

-

-

-

-

catalase/hydroperoxidase HPII

-

6

-

54

-

catalase/(hydro)peroxidase KatG

9

-

-

-

-

catalase/peroxidase

55

1

-

-

-

catalase-peroxidase KatB

4

-

-

-

-

haem catalase

1

-

-

-

-

peroxidase/catalase (perA)

2

-

-

-

-

thr operon leader peptide

1

-

-

1

-

catalase KatA

-

12

-

-

-

catalase KatB or CatB

-

3

-

1

-

catalase KatE

-

1

-

1

-

catalase KatX

-

5

-

-

-

catalase precursor

-

8

-

-

-

HktE

-

1

-

-

-

major catalase in spores

-

1

-

-

-

monofunctional catalase

-

1

-

1

-

phosphopyruvate hydratase

-

1

-

-

putative catalase

-

3

-

-

5

vegetative catalase 1

-

2

-

-

-

catalase domain protein

-

1

24

-

-

catalase, protein srpA precursor

-

-

3

-

-

catalase-like

-

4

13

-

-

putative catalase

-

-

9

5

-

putative chaperone protein

-

-

1

-

-

catalase 2

-

-

-

1

-

catalase C

-

-

-

2

-

DNA mismatch endonuclease

-

-

-

-

1

manganese containing catalase

-

-

-

-

53

non-heme catalase KatN

-

-

-

-

2

pseudocatalase

-

-

-

-

2

spore coat protein (CotJC)

-

2

-

-

31

sporulation manganese (Mn) catalase

-

-

-

-

1

YdbD

-

-

-

-

2

YdhU

-

-

-

-

1

unknown protein encoded by prophage CP-933X

-

-

-

-

1


NCBI original descriptions of prokaryotic catalases and comparison with the new ontology proposed by OxyGene Numbers stand for ab initio annotated catalases that were re-classed by OxyGene.

Thybert et al. BMC Genomics 2008 9:637   doi:10.1186/1471-2164-9-637

Open Data