Table 2

Top 25 up-regulated and 25 down-regulated genes on Affymetrix chips from SAS analysis

Affymetrix_ID

UniGene ID

Gene_Symbol

Log_fold_change (>0 = up-regulated; <0 = down-regulated)

-log10(p-value) for Estimate of diseased_healthy


1367581_a_at, 1396689_at

Rn.8871

Spp1

2.2450

41.2288

1378015_at

Rn.39658

RGD:1311996

1.9669

35.0162

1367784_a_at

Rn.1780

Clu

3.3779

29.5397

1367913_at

Rn.105938

Cygb

1.4106

28.3857

1381343_at, 1383222_at

Rn.1708

LOC257646

0.8336

22.6443

1386996_at

Rn.103179

RGD:628855

0.7756

22.4535

1388114_at

Rn.103179

Mrlcb

0.7756

22.4535

1388745_at

Rn.54039

RGD:1304636

0.7278

22.2871

1370992_a_at, 1371258_at

Rn.98846

Fga

1.0091

21.9972

1370186_at

Rn.13686

Psmb9

0.9171

21.6556

1398347_at

Rn.16368

RGD:1312008

1.1720

21.2353

1368504_at, 1398816_at

Rn.40177

Lamp1

0.4187

20.6298

1368168_at

Rn.16933

RGD:620889

2.1632

20.4333

1387391_at

Rn.10089

Cdkn1a

0.4408

20.1517

1373204_at

Rn.17071

RGD1310725_predicted

1.1134

18.9746

1369956_at

Rn.19927

RGD:620570

0.5636

18.7804

1385625_at, 1393240_at

Rn.16151

Efemp2

1.0126

18.3754

1368207_at

Rn.24997

Fxyd5

0.7122

17.9030

1371244_at

Rn.2498

RGD:1307758

0.5877

17.6513

1368160_at

Rn.34026

Igfbp1

1.0420

17.1419

1368821_at, 1368822_at, 1371331_at, 1394119_at

Rn.95652

Fstl1

0.7759

17.1139

1389189_at, 1396539_at, 1398294_at

Rn.6401

Actn1

1.4167

16.9389

1367712_at

Rn.25754

Timp1

1.3548

16.9170

1387892_at

Rn.2458

Tubb5

1.0106

16.8147

1367823_at, 1375144_at, 1386940_at, 1388312_at

Rn.10161

Timp2

0.2867

16.7147

1369400_a_at, 1388044_at, 1388063_a_at, 1398320_at

Rn.44844

Pfkfb2

-0.2293

20.3237

1370268_at

Rn.44291

Kcna5

-0.2714

17.3640

1369178_a_at, 1385148_at

Rn.91176

P2rx1

-0.2108

5.5590

1378419_at

Rn.87496

LOC474169

-0.3129

5.5606

1369279_at

Rn.81185

Dhrs9

-0.2163

5.5612

1388051_at

Rn.81026

Slc26a3

-0.3637

5.5618

1368695_at

Rn.11151

C4bp-ps1

-0.2888

5.5684

1369341_a_at

Rn.7033

Acvrinp1

-0.1886

5.5718

1394129_at, 1396858_at

Rn.7033

Acvrip1

-0.1886

5.5718

1369358_a_at

Rn.37430

Hap1

-0.1699

5.5727

1387320_a_at

Rn.89629

RGD:708527

-0.1887

5.5781

1367571_a_at, 1371206_a_at, 1398322_at

Rn.118681

Igf2

-0.1007

5.5784

1371564_at

Rn.103171

RGD:735157

-0.1572

5.5789

1387292_s_at, 1387991_at

Rn.80837

Capn8

-0.2614

5.5793

1369253_at

Rn.90021

Kremen

-0.2313

5.5831

1369240_a_at

Rn.10096

Avpr1b

-0.2056

5.5835

1382417_at

Rn.90967

RGD:1309306

-0.1498

5.5848

1369552_at

Rn.81187

Samsn1

-0.2144

5.5849

1368763_at

Rn.10652

Il3

-0.2808

5.5851

1369444_at

Rn.21402

Cyp19a1

-0.3457

5.5866

1387582_a_at

Rn.81203

Pde7b

-0.2523

5.5870

1375494_a_at, 1387409_x_at

Rn.10263

Nlgn3

-0.1551

5.5897

1377146_at

Rn.18675

RGD:621647

-0.2512

5.5908

1387615_at

Rn.44391

RGD:621843

-0.2146

5.5965

1387065_at, 1395839_at

Rn.37434

Plcd4

-0.2386

5.5978


Pandey et al. BMC Genomics 2008 9:624   doi:10.1186/1471-2164-9-624

Open Data