Evaluating genome-wide DNA methylation changes in mice by Methylation Specific Digital Karyotyping

doi:10.1186/1471-2164-9-598

BMC Genomics

Volume 9

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Boon K
Tomfohr JK
Bailey NW
Garantziotis S
Li Z
Brass DM
Maruoka S
Hollingsworth JW
Schwartz DA

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Tomfohr JK
Bailey NW
Garantziotis S
Li Z
Brass DM
Maruoka S
Hollingsworth JW
Schwartz DA
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Methodology article

Evaluating genome-wide DNA methylation changes in mice by Methylation Specific Digital Karyotyping

Kathy Boon¹ , John K Tomfohr¹ , Nathaniel W Bailey¹ , Stavros Garantziotis¹ , Zhuowei Li² , David M Brass¹^,2 , Shuichiro Maruoka¹ , John W Hollingsworth² and David A Schwartz¹^,3^,4

¹National Heart Lung and Blood Institute/National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA

²Duke University Medical Center, Durham, NC 27710, USA

³National Jewish Health, Denver, CO 80206, USA

⁴University of Colorado Health Sciences Center, Denver, CO 80206, USA

author email corresponding author email

BMC Genomics 2008, 9:598doi:10.1186/1471-2164-9-598


Published:	11 December 2008

Additional files

Additional file 1:

Differentially methylated genomic tags and nearest genes. Files 1 and 2 catalogs respectively the 82 genomic sequence tags with higher counts in the LMD library. Also indicated are the nearest genes.

Format: DOC Size: 293KB Download file

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Additional file 2:

Differentially methylated genomic tags and nearest genes. Catalogs the 71 genomic sequence tags with higher counts in the HMD MSDK library representing differentially methylated loci within the mouse genome. Also indicated are the nearest genes.

Format: DOC Size: 238KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional file 3:

Differentially expressed SAGE transcripts. Represents the transcript tags significantly over expressed in the HMD SAGE library.

Format: DOC Size: 355KB Download file

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Additional file 4:

Differentially expressed SAGE transcripts. Represents the transcript tags significantly over expressed in the LMD SAGE library.

Format: DOC Size: 2.9MB Download file

This file can be viewed with: Microsoft Word Viewer