Table 1

List of probes used to identify the Musa BAC clones sequenced as part of the present study. Estimated copy numbers of these sequences in rice, Sorghum and Musa are indicated for SbRPG (Sorghum bicolor) sequences. MA4 are BAC clones from M. acuminata cv. Calcutta-4 and MBP are BAC clones from M. balbisiana cv. Pisang Klutuk Wulung.

Probe name and AC number*

Putative function

Estimated copy number in rice by Blast analysis (Rice genes locus identifier)

Estimated copy number in Sorghum by Southern blot analysis

Estimated copy number in Musa by Southern blot analysis

Number of identified Musa BAC clones

Number of Musa BAC fingerprint groups

Musa BAC clones sequenced (size) and AC number*


SbRPG132

DQ185891

chlorophyll A-B binding protein type I

6

Os01g41710.1

Os09g17740.1

Os01g52240.1

Os03g39610.1

Os07g37550.1

Os11g13890.2

4

more than 4

23

6

MA4_25J11

(105019 bp)

AC186746

SbRPG373

DQ185892

hypothetical protein

1

Os07g02340.1

1

1

29

2

MA4_64C22

(80932 bp)

AC186752

MA4_8L21 (115790 bp) AC186748

SbRPG661

DQ185893

thioredoxin

2

Os10g34520.1

Os07g10250.1

2

2–3

20

2

MA4_54B05

(54106 bp)

AC186753

MA4_78I12 (150982 bp) AC186750

SbRPG748

DQ185894

porphobilinogen deaminase

1

Os07g10250.1

1

1

1

1

MA4_42M13

(29567 bp)

AC186749

SbRPG851

DQ185895

phosphoglycerate kinase

2

Os05g41640.1

Os01g58610.1

2

2–3

12

2

MA4_112I10

(102441 bp)

AC186756

MA4_106O17

(143796 bp) AC186747

SbRPG854

DQ185896

mitochondrial rieske protein

2

Os04g32660.1

Os02g32120.1

2

2

5

1

MA4_111B14

(146821 bp)

AC186954

CIR257

DQ334868

GA-20 oxidase

-

-

-

6

1

MA4_82I11

(102232 bp)

AC186955

-

MBP_81C12 (142973 bp) AC186754

CIR560

DQ334869

beta 1–3 glucanase

-

-

-

21

1

MA4_54N07

(96443 bp)

AC186751

-

MBP_91N22

(154246 bp)

AC186755


*AC number : accession number.

Lescot et al. BMC Genomics 2008 9:58   doi:10.1186/1471-2164-9-58

Open Data