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Resolution: standard / high Figure 6.
Sequence annotation of 4,664 high-quality poplar FLcDNAs against published databases. Panel A shows the percentage of FLcDNAs with similarity to entries in three databases
using expect (E) value thresholds of < 1e-05 and < 1e-50: matches to previously published poplar ESTs (i.e., ESTs available in GenBank, excluding
ESTs from this study) identified by BLASTN; amino acid sequences in the non-redundant
(NR) division of GenBank identified by BLASTX; and The Arabidopsis Information Resource
(TAIR) non-redundant Arabidopsis peptide matches identified by BLASTX. Panel B shows
a Venn diagram of distinct and overlapping patterns of sequence similarity against
the three databases (public poplar ESTs, TAIR, NR) at a BLAST E value threshold of
< 1e-05. At this threshold, 95 poplar FLcDNAs had no similarity to sequences in any of the
databases examined.
Ralph et al. BMC Genomics 2008 9:57 doi:10.1186/1471-2164-9-57 |