Table 1

Nucleotide polymorphism found in the eight housekeeping genes used for MLST

Gene

Template size

No. of alleles

No. (%) of polymorphic sites

Ks

Ka

Ka/Ks

π


dinB

450

30

59 (13.1)

0.124

0.00197

0.0159

0.0297

icdA

516

45

52 (10.1)

0.093

0.0004

0.0043

0.0273

pabB

468

32

44 (9.4)

0.075

0.00763

0.102

0.0226

polB

450

36

65 (14.4)

0.124

0.00301

0.024

0.0287

putP

456

25

43 (9.4)

0.067

0.0015

0.0225

0.0174

trpA

561

33

87 (15.5)

0.156

0.00537

0.0345

0.0393

trpB

594

25

65 (10.9)

0.133

0.00198

0.0149

0.0299

uidA

600

27

56 (9.3)

0.074

0.003

0.0408

0.0183


Ks: No. of synonymous changes per synonymous site. Ka: No. of non-synonymous changes per non-synonymous site.

π: nucleotide diversity.

Jaureguy et al. BMC Genomics 2008 9:560   doi:10.1186/1471-2164-9-560

Open Data