Table 8 |
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|
Comparison between SuperSAGE expression profiles and 16 K-microarray-generated expression data |
||
|
Section |
Annotation |
Uniprot ACC |
|
|
||
|
A |
9/13 hydroperoxide lyase |
Q7X9B3 |
|
Adenosine 5'-phosphosulfate reductase |
Q8W1A1 |
|
|
Alkaline alpha galactosidase I (Fragment) |
Q84NI7 |
|
|
At1g68060/T23K23 |
Q8L7S4 |
|
|
AT3g29575/MWE13 |
Q94F39 |
|
|
AT4g18030/T6K21 |
Q94EJ6 |
|
|
AT5g03040/F15A17 |
Q93ZH7 |
|
|
Auxin-induced beta-glucosidase |
Q7XJH8 |
|
|
Calcineurin B-like-interacting protein kinase |
Q84XC0 |
|
|
ERD3 protein |
Q94II3 |
|
|
Expansin-like protein (Fragment) |
Q7XHJ2 |
|
|
Gb| AAD25781.1 |
Q9FK34 |
|
|
General negative transcription regulator-like |
Q9LSS9 |
|
|
Glucan endo-1,3-beta-d-glucosidase precursor |
Q9ZP12 |
|
|
Glucosyltransferase-13 (Fragment) |
Q8S996 |
|
|
Leucine-rich repeat resistance protein-like protein |
Q93X72 |
|
|
Nine-cis-epoxycarotenoid dioxygenase1 |
Q8LP17 |
|
|
Photosystem I psaH protein |
Q7XA96 |
|
|
Plasma membrane intrinsic polypeptide |
Q9SMK5 |
|
|
PS60 protein precursor |
Q40473 |
|
|
Putative extracellular dermal glycoprotein |
Q9FSZ9 |
|
|
Putative wound-induced protein |
Q9SBR5 |
|
|
Pyruvate decarboxylase 1 (EC 4.1.1.1) |
Q84V95 |
|
|
Ubiquitin |
Q39257 |
|
|
|
||
|
B |
Basic blue copper protein |
Q9ZRV5 |
|
BZIP transcription factor ATB2 |
Q8L5W2 |
|
|
Cationic peroxidase |
Q9FT05 |
|
|
CjMDR1 |
Q94IH6 |
|
|
Extensin |
O65760 |
|
|
Putative ripening related protein |
Q8L6V6 |
|
|
Putative senescence-associated protein |
Q9AVI1 |
|
|
S-adenosyl-L-methionine |
Q84KK6 |
|
|
|
||
|
C |
Basic blue copper protein |
Q9ZRV5 |
|
BZIP transcription factor ATB2 |
Q8L5W2 |
|
|
Cationic peroxidase |
Q9FT05 |
|
|
Extensin |
O65760 |
|
|
Hydroxycinnamoyl transferase |
Q8GSM7 |
|
|
Putative ripening related protein |
Q8L6V6 |
|
|
Putative senescence-associated protein |
Q9AVI1 |
|
|
Putative UDP-glycose |
Q9M3H8 |
|
|
Root-specific metal transporter |
Q84LR1 |
|
|
Selenium binding protein |
Q93WS1 |
|
|
|
||
|
D |
1-deoxy-D-xylulose 5-phosphate synthase 1 prec. |
Q8L693 |
|
Asparagine synthetase |
O24483 |
|
|
Aspartic proteinase |
Q9SXU0 |
|
|
Aspartic proteinase 2 |
Q948P0 |
|
|
AT5g17550/K10A8 |
Q94EI3 |
|
|
AT5g64840/MXK3 |
Q93ZN6 |
|
|
ATP citrate lyase b-subunit |
Q93YH3 |
|
|
Auxin-induced beta-glucosidase |
Q7XJH8 |
|
|
CjMDR1 |
Q94IH6 |
|
|
Ferritin |
Q9ZP90 |
|
|
Gb| AAD25584.1 |
Q9FJL6 |
|
|
Glutathione S-transferase GST 11 (EC 2.5.1.18) |
Q9FQE7 |
|
|
Leucine-rich repeat resistance protein-like protein |
Q93X72 |
|
|
LHY protein |
Q8L5P7 |
|
|
Myo-inositol-1-phosphate synthase |
Q94C02 |
|
|
Phosphomevalonate kinase |
Q944G1 |
|
|
Plasma membrane intrinsic polypeptide |
Q9SMK5 |
|
|
Putative extracellular dermal glycoprotein |
Q9FSZ9 |
|
|
RING/C3HC4/PHD zinc finger-like protein |
Q84KA9 |
|
|
1-aminocyclopropane-1-carboxylic acid oxidase |
Q84L58 |
|
|
3-hydroxy-3-methylglutaryl coenzyme A |
Q8W2E3 |
|
|
68 kDa protein |
Q9M3Y6 |
|
|
Arabidopsis thaliana TAC clone:K16E1 |
Q9FH68 |
|
|
AT3g48690/T8P19 |
Q8VZG3 |
|
|
Avr9 elicitor response protein |
Q9ZS49 |
|
|
Basic blue copper protein |
Q9ZRV5 |
|
|
BZIP transcription factor ATB2 |
Q8L5W2 |
|
|
Cationic peroxidase |
Q9FT05 |
|
|
Dehydration responsive element binding protein |
Q7Y0Y9 |
|
|
Dehydrin-like protein |
Q945Q7 |
|
|
Drought responsive element binding protein |
Q5RM57 |
|
|
Expansin |
Q8GZD3 |
|
|
Extensin |
O65760 |
|
|
F14J16.29 |
Q9LG09 |
|
|
F20N2.11 |
Q9LFZ9 |
|
|
F3F9.21 |
Q9M9E5 |
|
|
HDA2 (Fragment) |
Q8LRK7 |
|
|
Hydroxycinnamoyl transferase |
Q8GSM7 |
|
|
Hypothetical protein |
Q9LEN5 |
|
|
Importin beta |
Q9FJD4 |
|
|
Ntdin |
Q9MBD6 |
|
|
Polygalacturonase-like protein |
Q9LRY8 |
|
|
Polygalacturonase-like protein; At5g41870 |
Q9FJ27 |
|
|
Protein phpsphatase 2C (PP2C) (EC 3.1.3.16) |
Q9M3V1 |
|
|
Putative imbibition protein |
Q9M442 |
|
|
Putative Pi starvation-induced protein |
O65757 |
|
|
Putative quinone oxidoreductase |
Q8L5Q7 |
|
|
Putative ripening related protein |
Q8L6V6 |
|
|
Putative senescence-associated protein |
Q9AVI1 |
|
|
Putative sucrose-H+ symporter |
Q84N01 |
|
|
Putative UDP-glycose |
Q9M3H8 |
|
|
Root-specific metal transporter |
Q84LR1 |
|
|
S-adenosyl-L-methionine |
Q84KK6 |
|
|
Selenium binding protein |
Q93WS1 |
|
|
|
||
|
Comparison between SuperSAGE expression profiles and 16K-microarray-generated expression data (Buitink and co-authors [10]). Four main categories from the cluster analysis in Figure 9 are detailed below. Section A: Down-regulated tags and down-regulated transcripts on the microarray. Section B: Contrasting SuperSAGE and microarray expression profiles (down- versus up-regulated) Section C: Contrasting SuperSAGE and microarray expression profiles (up-regulated vs. constitutive) Section D: Up-regulated or constitutive tags and 16K-microarray transcripts, respectively |
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|
Molina et al. BMC Genomics 2008 9:553 doi:10.1186/1471-2164-9-553 |
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