|
Sequence and assembly statistics |
||||||
| Pyrosequencing ESTs |
Sanger ESTs |
Pyrosequencing + Sanger ESTs |
Pyrosequencing assembly |
Sanger assembly |
Hybrid Assembly |
|
|
|
||||||
| No. sequences |
90,664 |
9,578 |
90,664 + 9,578 = 100,242 |
35,507 (11,155 assemblies) |
4,689 (1,584 assemblies) |
34,495 (10,811 assemblies) |
| Total bases (bp) |
17,315,041 |
4,811,851 |
22,126,892 |
8,274,073 |
2,796,219 |
9,552,701 |
| Minimum length (bp) |
100 |
100 |
100 |
100 |
100 |
100 |
| Average length (bp) |
190 |
502 |
220 |
233 |
596 |
276 |
| Maximum length (bp) |
425 |
1,002 |
1,002 |
1,385 |
4,283 |
4,471 |
| %GC |
50.3 |
51.1 |
50.5 |
51.3 |
53.3 |
51.7 |
| %N |
0.04 |
0 |
0.03 |
0.05 |
0 |
0.04 |
Cheung et al. BMC Genomics 2008 9:542 doi:10.1186/1471-2164-9-542 |
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