BMC Genomics

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Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays

Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J Gaffney, Roderick V Jensen and Jacek Majewski*

BMC Genomics 2008, 9:529 doi:10.1186/1471-2164-9-529

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BioMed Central: 8 citations

Research article   Open Access Highly Accessed

Normal colon epithelium: a dataset for the analysis of gene expression and alternative splicing events in colon disease

Wilfrido Mojica, Lesleyann Hawthorn BMC Genomics 2010, 11:5 (4 January 2010)

Methodology article   Open Access

Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation

Kevin CH Ha, Jasmin Coulombe-Huntington, Jacek Majewski BMC Genomics 2009, 10:519 (12 November 2009)

Methodology article   Open Access Highly Accessed

High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity

Weiyin Zhou, Margaret A Calciano, Heather Jordan, Michael Brenner, Seth Johnson, Darong Wu, Lin Lei, Diego Pallares, Pascale Beurdeley, Fabien Rouet, Pritmohinder S Gill, Laurent Bracco, Cyril Soucaille, Richard Einstein BMC Genetics 2009, 10:63 (5 October 2009)

Method   Open Access Highly Accessed

Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies

Essi Laajala, Tero Aittokallio, Riitta Lahesmaa, Laura L Elo Genome Biology 2009, 10:R77 (16 July 2009)

A novel statistical procedure is presented that uses probe-level information on Affymetrix exon arrays to detect differential splicing.

Research article   Open Access Highly Accessed

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing

Shrinivasrao P Mane, Clive Evans, Kristal L Cooper, Oswald R Crasta, Otto Folkerts, Stephen K Hutchison, Timothy T Harkins, Danielle Thierry-Mieg, Jean Thierry-Mieg, Roderick V Jensen BMC Genomics 2009, 10:264 (12 June 2009)

Methodology article   Open Access Highly Accessed

Differential splicing using whole-transcript microarrays

Mark D Robinson, Terence P Speed BMC Bioinformatics 2009, 10:156 (22 May 2009)

The Affymetrix GeneChip microarray platform, widely used to assay gene expression, can also detect differential splicing events with the help of a new statistical method called FIRMAGene that analyses information from poorly fitting adjacent probes.

Research article   Open Access Highly Accessed

Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array

Xingyi Hang, Peiyao Li, Zhifeng Li, Wubin Qu, Ying Yu, Hualing Li, Zhiyong Shen, Hao Zheng, Yan Gao, Yonghong Wu, Minghua Deng, Zhixian Sun, Chenggang Zhang BMC Genomics 2009, 10:126 (25 March 2009)

Correction   Open Access

Gene expression and isoform variation analysis using Affymetrix exon arrays

Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J Gaffney, Roderick V Jensen, Jacek Majewski BMC Genomics 2009, 10:121 (23 March 2009)