The prediction of protein-protein interaction networks in rice blast fungus

doi:10.1186/1471-2164-9-519

BMC Genomics

Volume 9

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Research article

The prediction of protein-protein interaction networks in rice blast fungus

Fei He¹ , Yan Zhang² , Hao Chen¹ , Ziding Zhang¹ and You-Liang Peng²

¹State Key Laboratory for ArgoBiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, PR China

²Department of Plant Pathology, China Agricultural University, Beijing 100193, PR China

author email corresponding author email

BMC Genomics 2008, 9:519doi:10.1186/1471-2164-9-519


Published:	2 November 2008

Additional files

Additional file 1:

The predicted PPIs in M. grisea. This file contains all the predicted protein-protein interaction pairs in M. grisea. For each predicted PPI pair, we list the corresponding BROAD accession numbers for two proteins, the two nominal p-values based on GO terms and the expression correlation, the prediction score S, the annotated Pfam interacting domain pair (if available), and the organisms that the inference came from.

Format: TXT Size: 562KB Download file

Additional file 2:

The information of hub proteins, pathogenicity proteins, and secreted proteins. This file contains Tables S1, S2, S3, and S4. Tables S1, S2, and S3 show the detailed information about the 55 hub proteins, 32 pathogenicity proteins, and 105 secreted proteins in M. grisea. Table S4 shows the GO annotations of 28 secreted M. grisea proteins that may interact with rice proteins.

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Additional file 3:

Clusters or communities containing pathogenicity genes (proteins). This pdf file contains a larger version of Figure 3.

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Additional file 4:

The network of pathogenicity proteins. This file contains a network graph showing 32 pathogenicity proteins and their interacting partners.

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Additional file 5:

The network of secreted proteins. This file contains a network graph showing 105 secreted proteins and their interaction partners.

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Additional file 6:

The sources of proteome and PPI data of the model organisms. This file contains a table (i.e., Table S5) showing the websites and versions of the proteome and PPI data of the model organisms used in this paper.

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