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Open AccessHighly AccessResearch article

Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription

Rebecca L Poole1 email, Gary LA Barker1 email, Kay Werner1 email, Gaia F Biggi2 email, Jane Coghill3 email, J George Gibbings4 email, Simon Berry5 email, Jim M Dunwell4 email and Keith J Edwards1 email

School of Biological Sciences, University of Bristol, Bristol, UK

School of Biological Sciences, University of Southampton, Southampton, UK

Transcriptomics Facility, School of Biological Sciences, University of Bristol, Bristol, UK

School of Biological Sciences, University of Reading, Reading, Berkshire, UK

Nickerson-Advanta, Station Road, Docking, Norfolk, UK

author email corresponding author email

BMC Genomics 2008, 9:475doi:10.1186/1471-2164-9-475

Published: 10 October 2008

Additional files

Additional File 1:

Zipped folder containing txt files. PERL scripts used for SAGE data annotations and analysis

Format: ZIP Size: 19.5MB Download file

Additional File 2:

Complete list of annotated SAGE tags (with count ≥2) and differential expression analysis.

Format: XLS Size: 4.6MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 3:

Annotated list of singleton SAGE tags

Format: XLS Size: 16.6MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 4:

Zip folder containing XLS and Word file. Data and discussion about the 50 most abundant sense UniGenes.

Format: ZIP Size: 66KB Download file

Additional File 5:

27 UniGenes investigated for evidence of alternative polyadenylation.

Format: XLS Size: 63KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 6:

50 most abundant antisense UniGenes.

Format: XLS Size: 129KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 7:

Pin array oligo sequences.

Format: XLS Size: 78KB Download file

This file can be viewed with: Microsoft Excel Viewer


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