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Open AccessHighly AccessResearch article

Persistence drives gene clustering in bacterial genomes

Gang Fang1 email, Eduardo PC Rocha1,2 email and Antoine Danchin1 email

1Génétique des Génomes Bactériens, Institut Pasteur, 28 rue du Dr. Roux, 75724 Paris Cedex 15, France

2Atelier de Bioinformatique, Université Pierre et Marie Curie-Paris 6, 12, rue Cuvier, 75005 Paris, France

author email corresponding author email

BMC Genomics 2008, 9:4doi:10.1186/1471-2164-9-4

Published: 7 January 2008

Additional files

Additional file 1:

Bacterial genomes used in this study, persistent genes and operons' distributions in bacterial chromosomes.

Format: XLS Size: 62KB Download file

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Additional file 2:

Gene clustering in bacterial chromosomes

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Additional file 3:

Distribution of groups of genes according to their persistence index

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Additional file 4:

Length of batches of contiguous genes indels

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Additional file 5:

a: Simulation without considering stabilization forces. b: Simulation with stabilization forces

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Additional file 6:

MAGP and its composition

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Additional file 7:

Venn diagram showing the intersections between the datasets of protein interactions and MAGP

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Additional file 8:

Functional annotation of the genes involved in MAGP

Format: XLS Size: 78KB Download file

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