Research article
Persistence drives gene clustering in bacterial genomes
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* Corresponding author: Antoine Danchin adanchin@pasteur.fr
1 Génétique des Génomes Bactériens, Institut Pasteur, 28 rue du Dr. Roux, 75724 Paris Cedex 15, France
2 Atelier de Bioinformatique, Université Pierre et Marie Curie-Paris 6, 12, rue Cuvier, 75005 Paris, France
BMC Genomics 2008, 9:4 doi:10.1186/1471-2164-9-4
Published: 7 January 2008Additional files
Additional file 1:
Bacterial genomes used in this study, persistent genes and operons' distributions in bacterial chromosomes.
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Additional file 2:
Gene clustering in bacterial chromosomes
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Additional file 3:
Distribution of groups of genes according to their persistence index
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Additional file 4:
Length of batches of contiguous genes indels
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Additional file 5:
a: Simulation without considering stabilization forces. b: Simulation with stabilization forces
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Additional file 6:
MAGP and its composition
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Additional file 7:
Venn diagram showing the intersections between the datasets of protein interactions and MAGP
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Additional file 8:
Functional annotation of the genes involved in MAGP
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