Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

doi:10.1186/1471-2164-9-383

BMC Genomics

Volume 9

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Futamura N
Totoki Y
Toyoda A
Igasaki T
Nanjo T
Seki M
Sakaki Y
Mari A
Shinozaki K
Shinohara K

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Futamura N
Totoki Y
Toyoda A
Igasaki T
Nanjo T
Seki M
Sakaki Y
Mari A
Shinozaki K
Shinohara K
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Research article

Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

Norihiro Futamura¹ , Yasushi Totoki² , Atsushi Toyoda³ , Tomohiro Igasaki¹ , Tokihiko Nanjo¹ , Motoaki Seki⁴ , Yoshiyuki Sakaki²^,3 , Adriano Mari⁵ , Kazuo Shinozaki⁴ and Kenji Shinohara¹

¹Department of Molecular and Cell Biology, Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305-8687, Japan

²Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, Yokohama, Kanagawa 230-0045, Japan

³Genome Core Technology Facilities, Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Kanagawa 230-0045, Japan

⁴Plant Functional Genomics Research Group, Plant Science Center, RIKEN Yokohama Institute, Yokohama, Kanagawa 230-0045, Japan

⁵Allergy Data Laboratories sc, Via Malipiero 28, 04100 Latina, Italy

author email corresponding author email

BMC Genomics 2008, 9:383doi:10.1186/1471-2164-9-383


Published:	11 August 2008

Additional files

Additional File 1:

Annotation and classification of all ESTs from male strobili of Cryptomeria japonica. Annotation and classification of all ESTs from male strobili of Cryptomeria japonica. This file shows that the list of DDBJ accession numbers in dbEST, the result of BLASTX against Uniprot TrEMBL, AtCDS and rice cDNA clones, and the functional classification using COG database for ESTs derived from the full-length enriched cDNA library of C. japonica male strobili.

Format: XLS Size: 9.1MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 2:

Classification and annotation of unique transcripts from male strobili of Cryptomeria japonica. Classification and annotation of unique transcripts from male strobili of Cryptomeria japonica. This file shows that the COG classification and Pfam families of unique transcripts from male strobili of C. japonica.

Format: XLS Size: 1.6MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 3:

List of stamen-specific transcripts from Arabidopsis and corresponding ESTs from male strobili of Cryptomeria japonica. List of stamen-specific transcripts from Arabidopsis and corresponding ESTs from male strobili of Cryptomeria japonica Description of data: This file shows that the list of stamen-specific transcripts from Arabidopsis and their homologs derived from ESTs from male strobili of C. japonica.

Format: XLS Size: 173KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 4:

List of male gametophyte-specific transcripts from Arabidopsis and corresponding ESTs from male strobili of Cryptomeria japonica. List of male gametophyte-specific transcripts from Arabidopsis and corresponding ESTs from male strobili of Cryptomeria japonica. This file shows that the list of male gametophyte-specific transcripts from Arabidopsis and their homologs derived from ESTs from male strobili of C. japonica.

Format: XLS Size: 186KB Download file

This file can be viewed with: Microsoft Excel Viewer