LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice

Additional file 1:

Sequences of 526 full-length LTR elements identified in this study. this file contains the sequences of all full-length LTR elements identified in this study.

Format: TXT Size: 5.4MB Download file

Additional file 2:

Distribution of the length of Copia and Gypsy superfamilies. this file contains two figures showing the distributions of the full-length and LTR length of Mt elements.

Format: PDF Size: 29KB Download file

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Additional file 3:

Domain structure and PBS usage of LTR families. this file provides the information to relate the LTR families with their protein domain structures and reverse transcription primer tRNAs.

Format: PDF Size: 18KB Download file

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Additional file 4:

Phylogeny of Copia- and Gypsy-like LTR families. this file contains the phylogenetic analysis of Copia and Gypsy superfamilies.

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Additional file 5:

Phylogenetic position of Mtr81. the RT sequence of Mtr81 do not belongs to Copia or Gypsy superfamily. It is placed as a third branch the phylogenetic tree.

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Additional file 6:

Insertion dates of 8 abundant LTR families. this file contains a figure showing the distribution of the insertion time of 8 abundant LTR families.

Format: PDF Size: 13KB Download file

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