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Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening

Ross N Crowhurst1 email, Andrew P Gleave1 email, Elspeth A MacRae1 email, Charles Ampomah-Dwamena1 email, Ross G Atkinson1 email, Lesley L Beuning1 email, Sean M Bulley1 email, David Chagne1 email, Ken B Marsh1 email, Adam J Matich1 email, Mirco Montefiori1 email, Richard D Newcomb1 email, Robert J Schaffer1 email, Björn Usadel2 email, Andrew C Allan1 email, Helen L Boldingh1 email, Judith H Bowen1 email, Marcus W Davy1 email, Rheinhart Eckloff1 email, A Ross Ferguson1 email, Lena G Fraser1 email, Emma Gera1 email, Roger P Hellens1 email, Bart J Janssen1 email, Karin Klages1 email, Kim R Lo1 email, Robin M MacDiarmid1 email, Bhawana Nain1 email, Mark A McNeilage1 email, Maysoon Rassam1 email, Annette C Richardson1 email, Erik HA Rikkerink1 email, Gavin S Ross1 email, Roswitha Schröder1 email, Kimberley C Snowden1 email, Edwige JF Souleyre1 email, Matt D Templeton1 email, Eric F Walton1 email, Daisy Wang1 email, Mindy Y Wang1 email, Yanming Y Wang1 email, Marion Wood1 email, Rongmei Wu1 email, Yar-Khing Yauk1 email and William A Laing1 email

1  The Horticultural and Food Research Institute of New Zealand, PB 92169, Auckland, New Zealand

2  Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany

author email corresponding author email

BMC Genomics 2008, 9:351doi:10.1186/1471-2164-9-351

Published: 27 July 2008

Additional files

Additional file 1:

Additional Table 1. Expressed sequence tags (ESTs) sequenced in Angiosperm orders and families.

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Additional file 2:

Additional Table 2a. Summary of library names, descriptions and statistics for sequenced Actinidia ESTs. Additional Table 2b. Actinidia libraries that were subtracted before sequencing to reduce redundant sequences.

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Additional file 3:

Additional Table 3 Codon usage calculated using 707 full-length Actinidia cDNA sequences.

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Additional file 4:

Additional Table 4. Source of oligonucleotides used to construct the Actinidia microarray slides by library and species

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Additional file 5:

Additional Table 5. Highly expressed ESTs in the Actinidia EST database.

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Additional file 6:

Additional Table 6. Most frequent InterPro families found in Actinidia NRs.

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Additional file 7:

Additional Table 7. Volatiles, acids, and sugars in Actinidia flowers and fruit

Format: DOC Size: 544KB Download file

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