Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803

doi:10.1186/1471-2164-9-344

BMC Genomics
Volume 9

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Pendse ND
Phillips KN
Cotner JB
Khodursky A

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Pendse ND
Phillips KN
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Research article

Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803

Zhigang Zhang¹^,2 , Ninad D Pendse¹^,2^,5 , Katherine N Phillips³ , James B Cotner³ and Arkady Khodursky¹^,4

¹BioTechnology Institute, 1479 Gortner Avenue, University of Minnesota, St. Paul, MN 55108, USA

²Department of Chemical Engineering and Materials Science, 421 Washington Avenue SE, University of Minnesota, Minneapolis, MN 55455, USA

³Department of Ecology, Evolution and Behavior, 1987 Upper Buford Circle, University of Minnesota, St. Paul, MN 55108, USA

⁴Department of Biochemistry, Molecular Biology and Biophysics, 1479 Gortner Avenue, University of Minnesota, St. Paul, MN 55108, USA

⁵InVivoScribe Technology, 6330 Nancy Ridge Drive, Suite 106, San Diego, CA 92121, USA

author email corresponding author email

BMC Genomics 2008, 9:344doi:10.1186/1471-2164-9-344


Published:	21 July 2008

Additional files

Additional File 1:

microarray_construction. This supplementary text describes the oligonucleotide probe design and microarray construction and validation.

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Additional File 2:

genesets. This file contains gene set annotations assembled from Cyanobase.

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This file can be viewed with: Microsoft Excel Viewer

Additional File 3:

s_deprivation_genes. A complete list of genes significantly affected by S deprivation. A statistical significance threshold was set at 1% false discovery rate (FDR). Top ranking differentially expressed genes were selected based on one additional criterion: at least 50% change in mean transcript abundance in at least 1 time point along the time course. The genes were listed based on the order, from top to bottom, in the clustered heat-map shown in Figure 2. Functional sub-/categories, clustering, gene annotations and log₂(ratio) values are listed.

Format: XLS Size: 86KB Download file

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Additional File 4:

supplementary_tables_figures. This file contains supplementary tables and figures.

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Additional File 5:

synecho_oligo_sequences. This file contains all of the array oligo probe sequences (sheet 1), including 3064 for Synechocystis ORFs, 13 for E. coli K-12 ORF controls, and 3 for Synechocystis rRNA controls. 104 genes that we failed to design oligo-probes for, and that were excluded from our microarray platform, are listed in sheet 2.

Format: XLS Size: 480KB Download file

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