Table 4

Fold-change correlations between SYBR Green RT2 Profiler PCR Arrays or TaqMan assays and the five microarray platforms

Correlation (R)

AFX

AG1

ABI

GEH

ILM

(Number of genes in comparison)


PCR Array

0.95 (89)

0.94 (86)

0.90 (89)

0.86 (88)

0.92 (87)

TaqMan*

0.92 (451–472)

0.91 (532–595)

0.85 (523–567)

0.85 (660–670)

0.91 (484–516)


*The average correlation R values and the number of genes in comparison for three sites are derived from the data provided by MAQC studies [12].

Arikawa et al. BMC Genomics 2008 9:328   doi:10.1186/1471-2164-9-328

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