Table 7

Ratio criterion sequences in indirect gene category

5-mer

Indirectly Affected

Ratio

6-mer

Indirectly Affected

Ratio


aatct

9

3.3

cattct

5

20.0

aacaa

16

2.7

ctgaaa

5

10.0

caaca

8

2.5

taagga

5

10.0

caata

8

2.3

aacaac

5

5.0

aatac

8

2.1

acaaca

5

5.0

tctct

9

2.1

tataag

7

3.5

acaca

8

2.0

aaacca

5

3.3

tataa

17

2.0

aataca

5

3.3

ataag

8

1.8

tctttc

5

3.3

gaata

9

1.6

aaacaa

9

3.0


Sequences ranked according to the number of occurrence in upstream regions of genes hypothesized to be indirectly affected compared to unaffected genes. The number of occurrences in affected genes and ratio of occurrences in affected genes to unaffected genes is listed for each sequence. Bolded sequences are shared with Table 6.

Eckdahl et al. BMC Genomics 2008 9:32   doi:10.1186/1471-2164-9-32

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