|
Classification of Genes in RDs. |
||||||||||||
| Gene class |
RD-3 |
RD-5 |
RD-6 |
RD-27 |
RD-10 |
RD-28 |
RD-29 |
RD-18 |
RD-1* |
Tot in RD |
Tohama I |
% in RD |
|
|
||||||||||||
| Amino acid biosynthesis |
1 |
1 |
135 |
4% |
||||||||
| Biosynthesis of cofactors, prosthetic groups, and carriers |
1 |
1 |
2 |
109 |
3% |
|||||||
| Cell envelope |
4 |
1 |
3 |
1 |
2 |
11 |
505 |
13% |
||||
| Cellular Processes |
1 |
1 |
1 |
3 |
169 |
4% |
||||||
| Central Intermediary metabolism |
1 |
1 |
1 |
3 |
174 |
5% |
||||||
| DNA Metabolism |
2 |
2 |
123 |
3% |
||||||||
| Energy Metabolism |
1 |
1 |
4 |
6 |
429 |
11% |
||||||
| Hypothetical proteins |
5 |
2 |
1 |
1 |
2 |
2 |
2 |
15 |
260 |
5% |
||
| Mobile and extrachromosomal element functions |
1 |
1 |
52 |
1% |
||||||||
| Protein synthesis |
1 |
1 |
186 |
5% |
||||||||
| Regulatory funcions |
3 |
2 |
1 |
2 |
8 |
322 |
8% |
|||||
| Transport and binding |
2 |
3 |
4 |
1 |
3 |
1 |
14 |
327 |
9% |
|||
| Unclassified |
7 |
2 |
8 |
5 |
5 |
5 |
32 |
940 |
25% |
|||
| (pseudogenes) |
4 (17%) |
2 (28%) |
1 (5.2%) |
5 (26%) |
2 (100%) |
3 (17.6%) |
1 (11%) |
18 (18%) |
368 |
10% |
||
| Total nr of genes in RD |
23 |
7 |
19 |
1 |
19 |
2 |
17 |
9 |
2 |
99 |
3731 |
|
|
The number of genes belonging to COG classes is indicated for each RD, for all RDs combined (Tot in RD) and for Tohama I [26]. In the last column the % of each class present in all RDs relative to Tohama I is indicated. | ||||||||||||
King et al. BMC Genomics 2008 9:311 doi:10.1186/1471-2164-9-311 |
||||||||||||