The highest-copy repeats are methylated in the small genome of the early divergent vascular plant Selaginella moellendorffii

doi:10.1186/1471-2164-9-282

BMC Genomics

Volume 9

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Chan AP
Melake-Berhan A
O'Brien K
Buckley S
Quan H
Chen D
Lewis M
Banks JA
Rabinowicz PD

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Chan AP
Melake-Berhan A
O'Brien K
Buckley S
Quan H
Chen D
Lewis M
Banks JA
Rabinowicz PD
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Research article

The highest-copy repeats are methylated in the small genome of the early divergent vascular plant Selaginella moellendorffii

Agnes P Chan¹ , Admasu Melake-Berhan¹ , Kimberly O'Brien¹^,3 , Stephanie Buckley¹^,4 , Hui Quan¹^,5 , Dan Chen¹ , Matthew Lewis¹ , Jo Ann Banks² and Pablo D Rabinowicz¹^,3^,6

¹J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA

²Department of Botany and Plant Pathology, Lilly Hall, Purdue University, West Lafayette, IN 47907, USA

³Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA

⁴Program in Oncology, University of Maryland School of Medicine, Baltimore, MD 21201, USA

⁵Applied Biosystems, 2130 Woodward St., Austin, TX 78744, USA

⁶Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, MD 21201, USA

author email corresponding author email

BMC Genomics 2008, 9:282doi:10.1186/1471-2164-9-282


Published:	12 June 2008

Additional files

Additional file 1:

Complete MF analysis results. An excel file listing BLAST hits of all MF sequences against all databases used, classified as "repeats", "low-copy sequences", and "chloroplast sequences".

Format: XLS Size: 338KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

Complete WGS analysis results. An excel file listing BLAST hits of all WGS sequences against all databases used, classified as "repeats", "low-copy sequences", and "chloroplast sequences".

Format: XLS Size: 295KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

PCR primers and target sequences. A Word document with the selected WGS and MF sequences that were checked by HpaII digestion and subsequent PCR. Primers are shown as underlined sequence and HpaII sites are shown in red.

Format: DOC Size: 41KB Download file

This file can be viewed with: Microsoft Word Viewer