BMC Genomics

official impact factor 4.21

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Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data

Alexei A Sharov, Shinji Masui, Lioudmila V Sharova, Yulan Piao, Kazuhiro Aiba, Ryo Matoba, Li Xin, Hitoshi Niwa and Minoru SH Ko*

BMC Genomics 2008, 9:269 doi:10.1186/1471-2164-9-269

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Global transcriptional profiles of beating clusters derived from human induced pluripotent stem cells and embryonic stem cells are highly similar

Manoj K Gupta, Damir J Illich, Andrea Gaarz, Matthias Matzkies, Filomain Nguemo, Kurt Pfannkuche, Huamin Liang, Sabine Classen, Michael Reppel, Joachim L Schultze, Jürgen Hescheler, Tomo Šarić BMC Developmental Biology 2010, 10:98 (15 September 2010)

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Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

Priit Adler, Raivo Kolde, Meelis Kull, Aleksandr Tkachenko, Hedi Peterson, Jüri Reimand, Jaak Vilo Genome Biology 2009, 10:R139 (4 December 2009)

The MEM web resource allows users to search for co-expressed genes across all microarray datasets in the ArrayExpress database.

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Novel sequential ChIP and simplified basic ChIP protocols for promoter co-occupancy and target gene identification in human embryonic stem cells

Ricardo B Medeiros, Kate J Papenfuss, Brian Hoium, Kristen Coley, Joy Jadrich, Saik-Kia Goh, Anuratha Elayaperumal, Julio E Herrera, Ernesto Resnik, Hsiao-Tzu Ni BMC Biotechnology 2009, 9:59 (29 June 2009)

A novel, fast, sequential chromatin immunoprecipitation (ChIP) protocol with high sensitivity identified promoter co-occupancy for transcription factors in human embryonic stem cells, providing a useful high-throughput tool to investigate protein–DNA interactions.